This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3stj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:56, 1 March 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3stj.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of the protease + PDZ1 domain of DegQ from Escherichia coli==
-
The line below this paragraph, containing "STRUCTURE_3stj", creates the "Structure Box" on the page.
+
<StructureSection load='3stj' size='340' side='right'caption='[[3stj]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3stj]] is a 25 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3STJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3STJ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3stj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3stj OCA], [https://pdbe.org/3stj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3stj RCSB], [https://www.ebi.ac.uk/pdbsum/3stj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3stj ProSAT]</span></td></tr>
-
{{STRUCTURE_3stj| PDB=3stj | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of the protease + PDZ1 domain of DegQ from Escherichia coli===
+
[https://www.uniprot.org/uniprot/DEGQ_ECOLI DEGQ_ECOLI] DegQ could degrade transiently denatured and unfolded proteins which accumulate in the periplasm following stress conditions. DegQ is efficient with Val-Xaa and Ile-Xaa peptide bonds, suggesting a preference for a beta-branched side chain amino acids. Only unfolded proteins devoid of disulfide bonds appear capable to be cleaved, thereby preventing non-specific proteolysis of folded proteins. DegQ can substitute for the periplasmic protease DegP.<ref>PMID:8576051</ref> <ref>PMID:8830688</ref>
-
 
+
== References ==
-
 
+
<references/>
-
<!--
+
__TOC__
-
The line below this paragraph, {{ABSTRACT_PUBMED_21685389}}, adds the Publication Abstract to the page
+
</StructureSection>
-
(as it appears on PubMed at http://www.pubmed.gov), where 21685389 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_21685389}}
+
-
 
+
-
==About this Structure==
+
-
[[3stj]] is a 25 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3STJ OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:021685389</ref><references group="xtra"/>
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Canellas, F.]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Clausen, T.]]
+
[[Category: Large Structures]]
-
[[Category: Ehrmann, M.]]
+
[[Category: Canellas F]]
-
[[Category: Krojer, T.]]
+
[[Category: Clausen T]]
-
[[Category: Malet, H.]]
+
[[Category: Ehrmann M]]
-
[[Category: Sawa, J.]]
+
[[Category: Krojer T]]
-
[[Category: Chaperone]]
+
[[Category: Malet H]]
-
[[Category: Degp]]
+
[[Category: Sawa J]]
-
[[Category: Degq]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Pdz domain]]
+
-
[[Category: Protease]]
+
-
[[Category: Serine protease]]
+

Current revision

Crystal structure of the protease + PDZ1 domain of DegQ from Escherichia coli

PDB ID 3stj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools