2y84

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[[Image:2y84.png|left|200px]]
 
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==DntR Inducer Binding Domain==
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The line below this paragraph, containing "STRUCTURE_2y84", creates the "Structure Box" on the page.
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<StructureSection load='2y84' size='340' side='right'caption='[[2y84]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2y84]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_sp._DNT Burkholderia sp. DNT]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y84 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Y84 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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{{STRUCTURE_2y84| PDB=2y84 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2y84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y84 OCA], [https://pdbe.org/2y84 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2y84 RCSB], [https://www.ebi.ac.uk/pdbsum/2y84 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2y84 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q7WT50_9BURK Q7WT50_9BURK]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Activation of LysR-type transcription factors (LTTRs) is thought to result from conformational changes that occur when inducer molecules bind to their Inducer Binding Domains (IBDs). However, the exact nature of these changes remains to be fully elucidated. We present the crystal structures of two truncated constructs of the LTTR DntR in their apo- forms and in complex with its natural inducer molecule, salicylate. These provide a fuller picture of the conformational changes that can occur in LTTR IBDs and offer insights that may be relevant when considering the mechanism of activation of LTTRs. Two of the crystal structures show that DntR IBDs can bind up to two inducer molecules. The full extent of conformational changes observed is achieved only when inducer molecules are bound in both binding sites identified. Point mutations disrupting the putative secondary binding site produce DntR variants with a reduced response to salicylate in a whole cell system, suggesting that this site is functionally relevant.
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===DNTR INDUCER BINDING DOMAIN===
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Crystal structures of DntR inducer binding domains in complex with salicylate offer insights into the activation of LysR-type transcriptional regulators.,Devesse L, Smirnova I, Lonneborg R, Kapp U, Brzezinski P, Leonard GA, Dian C Mol Microbiol. 2011 Jul;81(2):354-367. doi:, 10.1111/j.1365-2958.2011.07673.x. Epub 2011 Jun 22. PMID:21692874<ref>PMID:21692874</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_21692874}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2y84" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 21692874 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_21692874}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Burkholderia sp. DNT]]
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[[2y84]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_sp._dnt Burkholderia sp. dnt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y84 OCA].
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[[Category: Large Structures]]
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[[Category: Brzezinski P]]
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==Reference==
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[[Category: Devesse L]]
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<ref group="xtra">PMID:021692874</ref><references group="xtra"/>
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[[Category: Dian C]]
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[[Category: Burkholderia sp. dnt]]
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[[Category: Kapp U]]
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[[Category: Brzezinski, P.]]
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[[Category: Leonard GA]]
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[[Category: Devesse, L.]]
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[[Category: Lonneborg R]]
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[[Category: Dian, C.]]
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[[Category: Smirnova I]]
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[[Category: Kapp, U.]]
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[[Category: Leonard, G A.]]
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[[Category: Lonneborg, R.]]
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[[Category: Smirnova, I.]]
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[[Category: Transcription]]
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DntR Inducer Binding Domain

PDB ID 2y84

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