2nnf

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(New page: 200px<br /><applet load="2nnf" size="350" color="white" frame="true" align="right" spinBox="true" caption="2nnf, resolution 2.390&Aring;" /> '''Structure of the su...)
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[[Image:2nnf.jpg|left|200px]]<br /><applet load="2nnf" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2nnf, resolution 2.390&Aring;" />
 
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'''Structure of the sulfur carrier protein SoxY from Chlorobium limicola f thiosulfatophilum'''<br />
 
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==Overview==
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==Structure of the sulfur carrier protein SoxY from Chlorobium limicola f thiosulfatophilum==
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Dissimilatory oxidation of thiosulfate in the green sulfur bacterium, Chlorobium limicola f. thiosulfatophilum is carried out by the ubiquitous, sulfur-oxidizing (Sox) multi-enzyme system. In this system, SoxY plays a, key role, functioning as the sulfur substrate-binding protein that offers, its sulfur substrate, which is covalently bound to a conserved C-terminal, cysteine, to another oxidizing Sox enzyme. Here, we report the crystal, structures of a stand-alone SoxY protein of C. limicola f., thiosulfatophilum, solved at 2.15 A and 2.40 A resolution using X-ray, diffraction data collected at 100 K and room temperature, respectively., The structure reveals a monomeric Ig-like protein, with an N-terminal, alpha-helix, that oligomerizes into a tetramer via conserved contact, regions between the monomers. The tetramer can be described as a dimer of, dimers that exhibits one large hydrophobic contact region in each dimer, and two small hydrophilic interface patches in the tetramer. At the, tetramer interface patch, two conserved redox-active C-terminal cysteines, form an intersubunit disulfide bridge. Intriguingly, SoxY exhibits a, dimer/tetramer equilibrium that is dependent on the redox state of the, cysteines and on the type of sulfur substrate component bound to them., Taken together, the dimer/tetramer equilibrium, the specific interactions, between the subunits in the tetramer, and the significant conservation, level of the interfaces strongly indicate that these SoxY oligomers are, biologically relevant.
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<StructureSection load='2nnf' size='340' side='right'caption='[[2nnf]], [[Resolution|resolution]] 2.39&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2nnf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlorobium_limicola Chlorobium limicola]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NNF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NNF FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.39&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nnf OCA], [https://pdbe.org/2nnf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nnf RCSB], [https://www.ebi.ac.uk/pdbsum/2nnf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nnf ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q8RLX2_CHLLI Q8RLX2_CHLLI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nn/2nnf_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nnf ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Dissimilatory oxidation of thiosulfate in the green sulfur bacterium Chlorobium limicola f. thiosulfatophilum is carried out by the ubiquitous sulfur-oxidizing (Sox) multi-enzyme system. In this system, SoxY plays a key role, functioning as the sulfur substrate-binding protein that offers its sulfur substrate, which is covalently bound to a conserved C-terminal cysteine, to another oxidizing Sox enzyme. Here, we report the crystal structures of a stand-alone SoxY protein of C. limicola f. thiosulfatophilum, solved at 2.15 A and 2.40 A resolution using X-ray diffraction data collected at 100 K and room temperature, respectively. The structure reveals a monomeric Ig-like protein, with an N-terminal alpha-helix, that oligomerizes into a tetramer via conserved contact regions between the monomers. The tetramer can be described as a dimer of dimers that exhibits one large hydrophobic contact region in each dimer and two small hydrophilic interface patches in the tetramer. At the tetramer interface patch, two conserved redox-active C-terminal cysteines form an intersubunit disulfide bridge. Intriguingly, SoxY exhibits a dimer/tetramer equilibrium that is dependent on the redox state of the cysteines and on the type of sulfur substrate component bound to them. Taken together, the dimer/tetramer equilibrium, the specific interactions between the subunits in the tetramer, and the significant conservation level of the interfaces strongly indicate that these SoxY oligomers are biologically relevant.
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==About this Structure==
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X-ray crystallographic analysis of the sulfur carrier protein SoxY from Chlorobium limicola f. thiosulfatophilum reveals a tetrameric structure.,Stout J, Van Driessche G, Savvides SN, Van Beeumen J Protein Sci. 2007 Apr;16(4):589-601. Epub 2007 Feb 27. PMID:17327392<ref>PMID:17327392</ref>
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2NNF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Chlorobium_limicola Chlorobium limicola] with <scene name='pdbligand=PO4:'>PO4</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NNF OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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X-ray crystallographic analysis of the sulfur carrier protein SoxY from Chlorobium limicola f. thiosulfatophilum reveals a tetrameric structure., Stout J, Van Driessche G, Savvides SN, Van Beeumen J, Protein Sci. 2007 Feb 27;. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17327392 17327392]
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</div>
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<div class="pdbe-citations 2nnf" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Chlorobium limicola]]
[[Category: Chlorobium limicola]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Beeumen, J.Van.]]
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[[Category: Savvides SN]]
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[[Category: Driessche, G.Van.]]
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[[Category: Stout J]]
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[[Category: Savvides, S.N.]]
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[[Category: Van Beeumen J]]
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[[Category: Stout, J.]]
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[[Category: Van Driessche G]]
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[[Category: PO4]]
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[[Category: beta sandwich]]
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[[Category: green sulfur bacterium]]
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[[Category: sox]]
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[[Category: sulfur binding protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 20:56:26 2008''
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Current revision

Structure of the sulfur carrier protein SoxY from Chlorobium limicola f thiosulfatophilum

PDB ID 2nnf

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