2o0c

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(New page: 200px<br /><applet load="2o0c" size="350" color="white" frame="true" align="right" spinBox="true" caption="2o0c, resolution 2.600&Aring;" /> '''Crystal structure o...)
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[[Image:2o0c.gif|left|200px]]<br /><applet load="2o0c" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2o0c, resolution 2.600&Aring;" />
 
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'''Crystal structure of the H-NOX domain from Nostoc sp. PCC 7120 complexed to NO'''<br />
 
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==Overview==
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==Crystal structure of the H-NOX domain from Nostoc sp. PCC 7120 complexed to NO==
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Diatomic ligand discrimination by soluble guanylyl cyclase (sGC) is, paramount to cardiovascular homeostasis and neuronal signaling. Nitric, oxide (NO) stimulates sGC activity 200-fold compared with only four-fold, by carbon monoxide (CO). The molecular details of ligand discrimination, and differential response to NO and CO are not well understood. These, ligands are sensed by the heme domain of sGC, which belongs to the heme, nitric oxide oxygen (H-NOX) domain family, also evolutionarily conserved, in prokaryotes. Here we report crystal structures of the free, NO-bound, and CO-bound H-NOX domains of a cyanobacterial homolog. These structures, and complementary mutational analysis in sGC reveal a molecular ruler, mechanism that allows sGC to favor NO over CO while excluding oxygen, concomitant to signaling that exploits differential heme pivoting and heme, bending. The heme thereby serves as a flexing wedge, allowing the, N-terminal subdomain of H-NOX to shift concurrent with the transition of, the six- to five-coordinated NO-bound state upon sGC activation. This, transition can be modulated by mutations at sGC residues 74 and 145 and, corresponding residues in the cyanobacterial H-NOX homolog.
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<StructureSection load='2o0c' size='340' side='right'caption='[[2o0c]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2o0c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_sp._PCC_7120_=_FACHB-418 Nostoc sp. PCC 7120 = FACHB-418]. The January 2011 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Nitric Oxide Synthase'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2011_1 10.2210/rcsb_pdb/mom_2011_1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O0C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O0C FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NO:NITRIC+OXIDE'>NO</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o0c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o0c OCA], [https://pdbe.org/2o0c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o0c RCSB], [https://www.ebi.ac.uk/pdbsum/2o0c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o0c ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q8YUQ7_NOSS1 Q8YUQ7_NOSS1]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o0/2o0c_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o0c ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Diatomic ligand discrimination by soluble guanylyl cyclase (sGC) is paramount to cardiovascular homeostasis and neuronal signaling. Nitric oxide (NO) stimulates sGC activity 200-fold compared with only four-fold by carbon monoxide (CO). The molecular details of ligand discrimination and differential response to NO and CO are not well understood. These ligands are sensed by the heme domain of sGC, which belongs to the heme nitric oxide oxygen (H-NOX) domain family, also evolutionarily conserved in prokaryotes. Here we report crystal structures of the free, NO-bound, and CO-bound H-NOX domains of a cyanobacterial homolog. These structures and complementary mutational analysis in sGC reveal a molecular ruler mechanism that allows sGC to favor NO over CO while excluding oxygen, concomitant to signaling that exploits differential heme pivoting and heme bending. The heme thereby serves as a flexing wedge, allowing the N-terminal subdomain of H-NOX to shift concurrent with the transition of the six- to five-coordinated NO-bound state upon sGC activation. This transition can be modulated by mutations at sGC residues 74 and 145 and corresponding residues in the cyanobacterial H-NOX homolog.
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==About this Structure==
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NO and CO differentially activate soluble guanylyl cyclase via a heme pivot-bend mechanism.,Ma X, Sayed N, Beuve A, van den Akker F EMBO J. 2007 Jan 24;26(2):578-88. Epub 2007 Jan 11. PMID:17215864<ref>PMID:17215864</ref>
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2O0C is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.] with <scene name='pdbligand=HEM:'>HEM</scene> and <scene name='pdbligand=NO:'>NO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O0C OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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NO and CO differentially activate soluble guanylyl cyclase via a heme pivot-bend mechanism., Ma X, Sayed N, Beuve A, van den Akker F, EMBO J. 2007 Jan 24;26(2):578-88. Epub 2007 Jan 11. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17215864 17215864]
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</div>
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[[Category: Anabaena sp.]]
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<div class="pdbe-citations 2o0c" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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== References ==
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[[Category: Akker, F.van.den.]]
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<references/>
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[[Category: Ma, X.]]
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__TOC__
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[[Category: HEM]]
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</StructureSection>
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[[Category: NO]]
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[[Category: Large Structures]]
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[[Category: co]]
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[[Category: Nitric Oxide Synthase]]
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[[Category: guanylyl cyclase]]
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[[Category: Nostoc sp. PCC 7120 = FACHB-418]]
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[[Category: heme]]
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[[Category: RCSB PDB Molecule of the Month]]
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[[Category: no]]
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[[Category: Ma X]]
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[[Category: Van den Akker F]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 21:02:45 2008''
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Current revision

Crystal structure of the H-NOX domain from Nostoc sp. PCC 7120 complexed to NO

PDB ID 2o0c

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