2o34

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2o34" size="350" color="white" frame="true" align="right" spinBox="true" caption="2o34, resolution 1.95&Aring;" /> '''Crystal structure of...)
Current revision (09:22, 6 November 2024) (edit) (undo)
 
(19 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2o34.gif|left|200px]]<br /><applet load="2o34" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2o34, resolution 1.95&Aring;" />
 
-
'''Crystal structure of protein DVU1097 from Desulfovibrio vulgaris Hildenborough, Pfam DUF375'''<br />
 
-
==About this Structure==
+
==Crystal structure of protein DVU1097 from Desulfovibrio vulgaris Hildenborough, Pfam DUF375==
-
2O34 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris] with <scene name='pdbligand=NA:'>NA</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O34 OCA].
+
<StructureSection load='2o34' size='340' side='right'caption='[[2o34]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
[[Category: Desulfovibrio vulgaris]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O34 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O34 FirstGlance]. <br>
-
[[Category: Adams, J.M.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
[[Category: Almo, S.C.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
[[Category: Atwell, S.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o34 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o34 OCA], [https://pdbe.org/2o34 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o34 RCSB], [https://www.ebi.ac.uk/pdbsum/2o34 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o34 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2o34 TOPSAN]</span></td></tr>
-
[[Category: Bain, K.T.]]
+
</table>
-
[[Category: Boice, A.]]
+
== Evolutionary Conservation ==
-
[[Category: Burley, S.K.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Dickey, M.]]
+
Check<jmol>
-
[[Category: Emtage, S.]]
+
<jmolCheckbox>
-
[[Category: Gheyi, T.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o3/2o34_consurf.spt"</scriptWhenChecked>
-
[[Category: Groshong, C.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Malashkevich, V.N.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
+
</jmolCheckbox>
-
[[Category: Ozyurt, S.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o34 ConSurf].
-
[[Category: Powell, A.]]
+
<div style="clear:both"></div>
-
[[Category: Reyes, C.]]
+
__TOC__
-
[[Category: Rooney, I.]]
+
</StructureSection>
-
[[Category: Rutter, M.E.]]
+
[[Category: Large Structures]]
-
[[Category: Sauder, J.M.]]
+
[[Category: Adams JM]]
-
[[Category: Schwinn, K.D.]]
+
[[Category: Almo SC]]
-
[[Category: Thompson, D.A.]]
+
[[Category: Atwell S]]
-
[[Category: Toro, R.]]
+
[[Category: Bain KT]]
-
[[Category: Wasserman, S.R.]]
+
[[Category: Boice A]]
-
[[Category: NA]]
+
[[Category: Burley SK]]
-
[[Category: hypothetical protein]]
+
[[Category: Dickey M]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Emtage S]]
-
[[Category: nysgxrc]]
+
[[Category: Gheyi T]]
-
[[Category: protein structure initiative]]
+
[[Category: Groshong C]]
-
[[Category: psi]]
+
[[Category: Malashkevich VN]]
-
[[Category: structural genomics]]
+
[[Category: Ozyurt S]]
-
 
+
[[Category: Powell A]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 21:04:23 2008''
+
[[Category: Reyes C]]
 +
[[Category: Rooney I]]
 +
[[Category: Rutter ME]]
 +
[[Category: Sauder JM]]
 +
[[Category: Schwinn KD]]
 +
[[Category: Thompson DA]]
 +
[[Category: Toro R]]
 +
[[Category: Wasserman SR]]

Current revision

Crystal structure of protein DVU1097 from Desulfovibrio vulgaris Hildenborough, Pfam DUF375

PDB ID 2o34

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools