2o70
From Proteopedia
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(New page: 200px<br /><applet load="2o70" size="350" color="white" frame="true" align="right" spinBox="true" caption="2o70, resolution 1.80Å" /> '''Structure of OHCU de...) |
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- | [[Image:2o70.gif|left|200px]]<br /><applet load="2o70" size="350" color="white" frame="true" align="right" spinBox="true" | ||
- | caption="2o70, resolution 1.80Å" /> | ||
- | '''Structure of OHCU decarboxylase from zebrafish'''<br /> | ||
- | == | + | ==Structure of OHCU decarboxylase from zebrafish== |
- | + | <StructureSection load='2o70' size='340' side='right'caption='[[2o70]], [[Resolution|resolution]] 1.80Å' scene=''> | |
- | [ | + | == Structural highlights == |
- | [[ | + | <table><tr><td colspan='2'>[[2o70]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O70 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O70 FirstGlance]. <br> |
- | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> |
- | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o70 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o70 OCA], [https://pdbe.org/2o70 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o70 RCSB], [https://www.ebi.ac.uk/pdbsum/2o70 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o70 ProSAT]</span></td></tr> |
- | [ | + | </table> |
- | + | == Function == | |
- | [ | + | [https://www.uniprot.org/uniprot/URAD_DANRE URAD_DANRE] Catalyzes the stereoselective decarboxylation of 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) to (S)-allantoin. |
- | [[ | + | == Evolutionary Conservation == |
- | [ | + | [[Image:Consurf_key_small.gif|200px|right]] |
- | [[ | + | Check<jmol> |
- | [ | + | <jmolCheckbox> |
- | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o7/2o70_consurf.spt"</scriptWhenChecked> | |
+ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
+ | <text>to colour the structure by Evolutionary Conservation</text> | ||
+ | </jmolCheckbox> | ||
+ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o70 ConSurf]. | ||
+ | <div style="clear:both"></div> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The complete degradation of uric acid to (S)-allantoin, as recently elucidated, involves three enzymatic reactions. Inactivation by pseudogenization of the genes of the pathway occurred during hominoid evolution, resulting in a high concentration of urate in the blood and susceptibility to gout. Here, we describe the 1.8A resolution crystal structure of the homodimeric 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, which catalyzes the last step in the urate degradation pathway, for both ligand-free enzyme and enzyme in complex with the substrate analogs (R)-allantoin and guanine. Each monomer comprises ten alpha-helices, grouped into two domains and assembled in a novel fold. The structure and the mutational analysis of the active site have allowed us to identify some residues that are essential for catalysis, among which His-67 and Glu-87 appear to play a particularly significant role. Glu-87 may facilitate the exit of the carboxylate group because of electrostatic repulsion that destabilizes the ground state of the substrate, whereas His-67 is likely to be involved in a protonation step leading to the stereoselective formation of the (S)-allantoin enantiomer as reaction product. The structural and functional characterization of 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase can provide useful information in view of the potential use of this enzyme in the enzymatic therapy of gout. | ||
- | + | The structure of 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase provides insights into the mechanism of uric acid degradation.,Cendron L, Berni R, Folli C, Ramazzina I, Percudani R, Zanotti G J Biol Chem. 2007 Jun 22;282(25):18182-9. Epub 2007 Apr 11. PMID:17428786<ref>PMID:17428786</ref> | |
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 2o70" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Danio rerio]] | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Berni R]] | ||
+ | [[Category: Cendron L]] | ||
+ | [[Category: Folli C]] | ||
+ | [[Category: Percudani R]] | ||
+ | [[Category: Ramazzina I]] | ||
+ | [[Category: Zanotti G]] |
Current revision
Structure of OHCU decarboxylase from zebrafish
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Categories: Danio rerio | Large Structures | Berni R | Cendron L | Folli C | Percudani R | Ramazzina I | Zanotti G