This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2oa4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2oa4" size="350" color="white" frame="true" align="right" spinBox="true" caption="2oa4" /> '''Solution NMR Structure: Northeast Structural...)
Current revision (00:16, 28 December 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2oa4.gif|left|200px]]<br /><applet load="2oa4" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2oa4" />
 
-
'''Solution NMR Structure: Northeast Structural Genomics Consortium Target SiR5'''<br />
 
-
==About this Structure==
+
==Solution NMR Structure: Northeast Structural Genomics Consortium Target SiR5==
-
2OA4 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Silicibacter_pomeroyi Silicibacter pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OA4 OCA].
+
<StructureSection load='2oa4' size='340' side='right'caption='[[2oa4]]' scene=''>
-
[[Category: Silicibacter pomeroyi]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2oa4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OA4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OA4 FirstGlance]. <br>
-
[[Category: Acton, T.B.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
[[Category: Baran, M.C.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oa4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oa4 OCA], [https://pdbe.org/2oa4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oa4 RCSB], [https://www.ebi.ac.uk/pdbsum/2oa4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oa4 ProSAT], [https://www.topsan.org/Proteins/NESGC/2oa4 TOPSAN]</span></td></tr>
-
[[Category: Burkhard, R.]]
+
</table>
-
[[Category: Chen, C.X.]]
+
== Function ==
-
[[Category: Cunningham, K.]]
+
[https://www.uniprot.org/uniprot/Q5LST8_RUEPO Q5LST8_RUEPO]
-
[[Category: Liu, J.]]
+
== Evolutionary Conservation ==
-
[[Category: Ma, L.C.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Montelione, G.T.]]
+
Check<jmol>
-
[[Category: NESG, Northeast.Structural.Genomics.Consortium.]]
+
<jmolCheckbox>
-
[[Category: Nwosu, C.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oa/2oa4_consurf.spt"</scriptWhenChecked>
-
[[Category: Rossi, P.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Swapna, G.V.T.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Wang, L.]]
+
</jmolCheckbox>
-
[[Category: Xiao, R.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oa4 ConSurf].
-
[[Category: nesg]]
+
<div style="clear:both"></div>
-
[[Category: nmr structure]]
+
__TOC__
-
[[Category: northeast structural genomics consortium]]
+
</StructureSection>
-
[[Category: protein structure initiative]]
+
[[Category: Large Structures]]
-
[[Category: psi-2]]
+
[[Category: Ruegeria pomeroyi]]
-
[[Category: sir5]]
+
[[Category: Acton TB]]
-
[[Category: structural genomics]]
+
[[Category: Baran MC]]
-
 
+
[[Category: Burkhard R]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 21:07:45 2008''
+
[[Category: Chen CX]]
 +
[[Category: Cunningham K]]
 +
[[Category: Liu J]]
 +
[[Category: Ma L-C]]
 +
[[Category: Montelione GT]]
 +
[[Category: Nwosu C]]
 +
[[Category: Rossi P]]
 +
[[Category: Swapna GVT]]
 +
[[Category: Wang L]]
 +
[[Category: Xiao R]]

Current revision

Solution NMR Structure: Northeast Structural Genomics Consortium Target SiR5

PDB ID 2oa4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools