2yal

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[[Image:2yal.png|left|200px]]
 
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==SinR, Master Regulator of biofilm formation in Bacillus subtilis==
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The line below this paragraph, containing "STRUCTURE_2yal", creates the "Structure Box" on the page.
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<StructureSection load='2yal' size='340' side='right'caption='[[2yal]], [[Resolution|resolution]] 2.27&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2yal]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YAL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YAL FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.27&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
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{{STRUCTURE_2yal| PDB=2yal | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yal FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yal OCA], [https://pdbe.org/2yal PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yal RCSB], [https://www.ebi.ac.uk/pdbsum/2yal PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yal ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SINR_BACSU SINR_BACSU] Negative as well as positive regulator of alternate developmental processes that are induced at the end of vegetative growth in response to nutrient depletion. Binds to the alkaline protease (aprE) gene at two sites. Also acts as a repressor of the key sporulation gene spo0A. Negatively regulates transcription of the eps operon, which is responsible for the biosynthesis of an exopolysaccharide involved in biofilm formation; therefore it could govern the transition between a state in which bacteria swim or swarm and a state in which bacteria assemble into multicellular communities. Acts with Hpr as a corepressor of epr expression. Also negatively regulates transcription of the lutABC operon, which is required for lactate utilization. Repressor activity is regulated by SinI.<ref>PMID:1898931</ref> <ref>PMID:7642487</ref> <ref>PMID:15661000</ref> <ref>PMID:16923912</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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sinR encodes a tetrameric repressor of genes required for biofilm formation in Bacillus subtilis. sinI, which is transcribed under Spo0A control, encodes a dimeric protein that binds to SinR to form a SinR-SinI heterodimer in which the DNA-binding functions of SinR are abrogated and repression of biofilm genes is relieved. The heterodimer-forming surface comprises residues conserved between SinR and SinI. Each forms a pair of alpha-helices that hook together to form an intermolecular four-helix bundle. Here, we are interested in the assembly of the SinR tetramer and its binding to DNA. Size-exclusion chromatography with multi-angle laser light scattering and crystallographic analysis reveal that a DNA-binding fragment of SinR (residues 1-69) is a monomer, while a SinI-binding fragment (residues 74-111) is a tetramer arranged as a dimer of dimers. The SinR(74-111) chain forms two alpha-helices with the organisation of the dimer similar to that observed in the SinR-SinI complex. The tetramer is formed through interactions of residues at the C-termini of the four chains. A model of the intact SinR tetramer in which the DNA binding domains surround the tetramerisation core was built. Fluorescence anisotropy and surface plasmon resonance experiments showed that SinR binds to an oligonucleotide duplex, 5'-TTTGTTCTCTAAAGAGAACTTA-3', containing a pair of SinR consensus sequences in inverted orientation with a K(d) of 300 nM. The implications of these data for promoter binding and the curious quaternary structural transitions of SinR upon binding to (i) SinI and (ii) the SinR-like protein SlrR, which "repurposes" SinR as a repressor of autolysin and motility genes, are discussed.
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===SINR, MASTER REGULATOR OF BIOFILM FORMATION IN BACILLUS SUBTILIS===
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Structure and Organisation of SinR, the Master Regulator of Biofilm Formation in Bacillus subtilis.,Colledge VL, Fogg MJ, Levdikov VM, Leech A, Dodson EJ, Wilkinson AJ J Mol Biol. 2011 Aug 19;411(3):597-613. Epub 2011 Jun 25. PMID:21708175<ref>PMID:21708175</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 2yal" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 21708175 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_21708175}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[2yal]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YAL OCA].
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==Reference==
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<ref group="xtra">PMID:021708175</ref><references group="xtra"/>
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[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
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[[Category: Colledge, V L.]]
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[[Category: Large Structures]]
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[[Category: Dodson, E J.]]
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[[Category: Colledge VL]]
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[[Category: Fogg, M J.]]
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[[Category: Dodson EJ]]
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[[Category: Leech, A.]]
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[[Category: Fogg MJ]]
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[[Category: Levdikov, V M.]]
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[[Category: Leech A]]
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[[Category: Wilkinson, A J.]]
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[[Category: Levdikov VM]]
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[[Category: Antagonist]]
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[[Category: Wilkinson AJ]]
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[[Category: Sporulation]]
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[[Category: Transcription]]
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[[Category: Transcription regulator]]
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Current revision

SinR, Master Regulator of biofilm formation in Bacillus subtilis

PDB ID 2yal

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