This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3r6v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:12, 14 March 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3r6v.png|left|200px]]
 
-
<!--
+
==Crystal structure of aspartase from Bacillus sp. YM55-1 with bound L-aspartate==
-
The line below this paragraph, containing "STRUCTURE_3r6v", creates the "Structure Box" on the page.
+
<StructureSection load='3r6v' size='340' side='right'caption='[[3r6v]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3r6v]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._YM55-1 Bacillus sp. YM55-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R6V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R6V FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ASP:ASPARTIC+ACID'>ASP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
{{STRUCTURE_3r6v| PDB=3r6v | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r6v OCA], [https://pdbe.org/3r6v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r6v RCSB], [https://www.ebi.ac.uk/pdbsum/3r6v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r6v ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of aspartase from Bacillus sp. YM55-1 with bound L-aspartate===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9LCC6_9BACI Q9LCC6_9BACI]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_21661762}}, adds the Publication Abstract to the page
+
[[Category: Bacillus sp. YM55-1]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 21661762 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
[[Category: Fibriansah G]]
-
{{ABSTRACT_PUBMED_21661762}}
+
[[Category: Poelarends GJ]]
-
 
+
[[Category: Puthan Veetil V]]
-
==About this Structure==
+
[[Category: Thunnissen A-MWH]]
-
[[3r6v]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_sp. Bacillus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R6V OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:021661762</ref><references group="xtra"/>
+
-
[[Category: Aspartate ammonia-lyase]]
+
-
[[Category: Bacillus sp.]]
+
-
[[Category: Fibriansah, G.]]
+
-
[[Category: Poelarends, G J.]]
+
-
[[Category: Thunnissen, A M.W H.]]
+
-
[[Category: Veetil, V Puthan.]]
+
-
[[Category: Aspartase]]
+
-
[[Category: Aspartate ammonia lyase]]
+
-
[[Category: Lyase]]
+

Current revision

Crystal structure of aspartase from Bacillus sp. YM55-1 with bound L-aspartate

PDB ID 3r6v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools