2oh7

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(New page: 200px<br /><applet load="2oh7" size="350" color="white" frame="true" align="right" spinBox="true" caption="2oh7, resolution 2.45&Aring;" /> '''The Crystal Structur...)
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[[Image:2oh7.jpg|left|200px]]<br /><applet load="2oh7" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2oh7, resolution 2.45&Aring;" />
 
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'''The Crystal Structure of Cypovirus Polyhedra containing the Human ZIP-kinase'''<br />
 
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==Overview==
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==The Crystal Structure of Cypovirus Polyhedra containing the Human ZIP-kinase==
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Cypoviruses and baculoviruses are notoriously difficult to eradicate, because the virus particles are embedded in micrometre-sized protein, crystals called polyhedra. The remarkable stability of polyhedra means, that, like bacterial spores, these insect viruses remain infectious for, years in soil. The environmental persistence of polyhedra is the cause of, significant losses in silkworm cocoon harvests but has also been exploited, against pests in biological alternatives to chemical insecticides., Although polyhedra have been extensively characterized since the early, 1900s, their atomic organization remains elusive. Here we describe the 2 A, crystal structure of both recombinant and infectious silkworm cypovirus, polyhedra determined using crystals 5-12 micrometres in diameter purified, from insect cells. These are the smallest crystals yet used for de novo, X-ray protein structure determination. We found that polyhedra are made of, trimers of the viral polyhedrin protein and contain nucleotides. Although, the shape of these building blocks is reminiscent of some capsid trimers, polyhedrin has a new fold and has evolved to assemble in vivo into, three-dimensional cubic crystals rather than icosahedral shells. The, polyhedrin trimers are extensively cross-linked in polyhedra by, non-covalent interactions and pack with an exquisite molecular, complementarity similar to that of antigen-antibody complexes. The, resulting ultrastable and sealed crystals shield the virus particles from, environmental damage. The structure suggests that polyhedra can serve as, the basis for the development of robust and versatile nanoparticles for, biotechnological applications such as microarrays and biopesticides.
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<StructureSection load='2oh7' size='340' side='right'caption='[[2oh7]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2oh7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OH7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OH7 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CTP:CYTIDINE-5-TRIPHOSPHATE'>CTP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oh7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oh7 OCA], [https://pdbe.org/2oh7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oh7 RCSB], [https://www.ebi.ac.uk/pdbsum/2oh7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oh7 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/O10693_CPVBM O10693_CPVBM]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cypoviruses and baculoviruses are notoriously difficult to eradicate because the virus particles are embedded in micrometre-sized protein crystals called polyhedra. The remarkable stability of polyhedra means that, like bacterial spores, these insect viruses remain infectious for years in soil. The environmental persistence of polyhedra is the cause of significant losses in silkworm cocoon harvests but has also been exploited against pests in biological alternatives to chemical insecticides. Although polyhedra have been extensively characterized since the early 1900s, their atomic organization remains elusive. Here we describe the 2 A crystal structure of both recombinant and infectious silkworm cypovirus polyhedra determined using crystals 5-12 micrometres in diameter purified from insect cells. These are the smallest crystals yet used for de novo X-ray protein structure determination. We found that polyhedra are made of trimers of the viral polyhedrin protein and contain nucleotides. Although the shape of these building blocks is reminiscent of some capsid trimers, polyhedrin has a new fold and has evolved to assemble in vivo into three-dimensional cubic crystals rather than icosahedral shells. The polyhedrin trimers are extensively cross-linked in polyhedra by non-covalent interactions and pack with an exquisite molecular complementarity similar to that of antigen-antibody complexes. The resulting ultrastable and sealed crystals shield the virus particles from environmental damage. The structure suggests that polyhedra can serve as the basis for the development of robust and versatile nanoparticles for biotechnological applications such as microarrays and biopesticides.
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==About this Structure==
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The molecular organization of cypovirus polyhedra.,Coulibaly F, Chiu E, Ikeda K, Gutmann S, Haebel PW, Schulze-Briese C, Mori H, Metcalf P Nature. 2007 Mar 1;446(7131):97-101. PMID:17330045<ref>PMID:17330045</ref>
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2OH7 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori] with <scene name='pdbligand=CL:'>CL</scene>, <scene name='pdbligand=MG:'>MG</scene>, <scene name='pdbligand=GTP:'>GTP</scene>, <scene name='pdbligand=ATP:'>ATP</scene> and <scene name='pdbligand=CTP:'>CTP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OH7 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The molecular organization of cypovirus polyhedra., Coulibaly F, Chiu E, Ikeda K, Gutmann S, Haebel PW, Schulze-Briese C, Mori H, Metcalf P, Nature. 2007 Mar 1;446(7131):97-101. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17330045 17330045]
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</div>
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[[Category: Bombyx mori]]
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<div class="pdbe-citations 2oh7" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Chiu, E.]]
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[[Category: Coulibaly, F.]]
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[[Category: Gutmann, S.]]
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[[Category: Haebel, P.W.]]
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[[Category: Ikeda, K.]]
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[[Category: Metcalf, P.]]
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[[Category: Mori, H.]]
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[[Category: Schulze-Briese, C.]]
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[[Category: ATP]]
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[[Category: CL]]
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[[Category: CTP]]
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[[Category: GTP]]
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[[Category: MG]]
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[[Category: beta sandwich]]
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[[Category: intracellular crystal]]
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[[Category: nucleotide binding]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 21:11:16 2008''
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==See Also==
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*[[Polyhedrin|Polyhedrin]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Bombyx mori]]
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[[Category: Large Structures]]
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[[Category: Chiu E]]
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[[Category: Coulibaly F]]
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[[Category: Gutmann S]]
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[[Category: Haebel PW]]
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[[Category: Ikeda K]]
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[[Category: Metcalf P]]
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[[Category: Mori H]]
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[[Category: Schulze-Briese C]]

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The Crystal Structure of Cypovirus Polyhedra containing the Human ZIP-kinase

PDB ID 2oh7

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