2ok7

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(New page: 200px<br /><applet load="2ok7" size="350" color="white" frame="true" align="right" spinBox="true" caption="2ok7, resolution 2.70&Aring;" /> '''Ferredoxin-NADP+ red...)
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[[Image:2ok7.gif|left|200px]]<br /><applet load="2ok7" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2ok7, resolution 2.70&Aring;" />
 
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'''Ferredoxin-NADP+ reductase from Plasmodium falciparum with 2'P-AMP'''<br />
 
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==Overview==
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==Ferredoxin-NADP+ reductase from Plasmodium falciparum with 2'P-AMP==
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The completion of the Plasmodium falciparum genome sequence has recently, promoted the search for new antimalarial drugs. More specifically, metabolic pathways of the apicoplast, a key organelle for survival of the, parasite, have been recognized as potential targets for the development of, specific new antimalarial agents. As most apicomplexan parasites, P., falciparum displays a plant-type ferredoxin-NADP(+) reductase, yielding, reduced ferredoxin for essential biosynthetic pathways in the apicoplast., Here we report a molecular, kinetic and ligand binding characterization of, the recombinant ferredoxin-NADP(+) reductase from P. falciparum, in the, light of current data available for plant ferredoxin-NADP(+) reductases., In parallel with the functional characterization, we describe the crystal, structures of P. falciparum ferredoxin-NADP(+) reductase in free form and, in complex with 2'-phospho-AMP (at 2.4 and 2.7 A resolution, respectively). The enzyme displays structural properties likely to be, unique to plasmodial reductases. In particular, the two crystal structures, highlight a covalent dimer, which relies on the oxidation of residue Cys99, in two opposing subunits, and a helix-coil transition that occurs in the, NADP-binding domain, triggered by 2'-phospho-AMP binding. Studies in, solution show that NADP(+), as well as 2'-phospho-AMP, promotes the, formation of the disulfide-stabilized dimer. The isolated dimer is, essentially inactive, but full activity is recovered upon disulfide, reduction. The occurrence of residues unique to the plasmodial enzyme, and, the discovery of specific conformational properties, highlight the, NADP-binding domain of P. falciparum ferredoxin-NADP(+) reductase as, particularly suited for the rational development of antimalarial, compounds.
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<StructureSection load='2ok7' size='340' side='right'caption='[[2ok7]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2ok7]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum_3D7 Plasmodium falciparum 3D7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OK7 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A2P:ADENOSINE-2-5-DIPHOSPHATE'>A2P</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ok7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ok7 OCA], [https://pdbe.org/2ok7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ok7 RCSB], [https://www.ebi.ac.uk/pdbsum/2ok7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ok7 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/FENR_PLAF7 FENR_PLAF7] May play a role in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis.<ref>PMID:16289098</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ok/2ok7_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ok7 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The completion of the Plasmodium falciparum genome sequence has recently promoted the search for new antimalarial drugs. More specifically, metabolic pathways of the apicoplast, a key organelle for survival of the parasite, have been recognized as potential targets for the development of specific new antimalarial agents. As most apicomplexan parasites, P. falciparum displays a plant-type ferredoxin-NADP(+) reductase, yielding reduced ferredoxin for essential biosynthetic pathways in the apicoplast. Here we report a molecular, kinetic and ligand binding characterization of the recombinant ferredoxin-NADP(+) reductase from P. falciparum, in the light of current data available for plant ferredoxin-NADP(+) reductases. In parallel with the functional characterization, we describe the crystal structures of P. falciparum ferredoxin-NADP(+) reductase in free form and in complex with 2'-phospho-AMP (at 2.4 and 2.7 A resolution, respectively). The enzyme displays structural properties likely to be unique to plasmodial reductases. In particular, the two crystal structures highlight a covalent dimer, which relies on the oxidation of residue Cys99 in two opposing subunits, and a helix-coil transition that occurs in the NADP-binding domain, triggered by 2'-phospho-AMP binding. Studies in solution show that NADP(+), as well as 2'-phospho-AMP, promotes the formation of the disulfide-stabilized dimer. The isolated dimer is essentially inactive, but full activity is recovered upon disulfide reduction. The occurrence of residues unique to the plasmodial enzyme, and the discovery of specific conformational properties, highlight the NADP-binding domain of P. falciparum ferredoxin-NADP(+) reductase as particularly suited for the rational development of antimalarial compounds.
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==About this Structure==
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Ferredoxin-NADP+ reductase from Plasmodium falciparum undergoes NADP+-dependent dimerization and inactivation: functional and crystallographic analysis.,Milani M, Balconi E, Aliverti A, Mastrangelo E, Seeber F, Bolognesi M, Zanetti G J Mol Biol. 2007 Mar 23;367(2):501-13. Epub 2007 Jan 9. PMID:17258767<ref>PMID:17258767</ref>
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2OK7 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum] with <scene name='pdbligand=NA:'>NA</scene>, <scene name='pdbligand=FAD:'>FAD</scene> and <scene name='pdbligand=A2P:'>A2P</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OK7 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Ferredoxin-NADP(+) Reductase from Plasmodium falciparum Undergoes NADP(+)-dependent Dimerization and Inactivation: Functional and Crystallographic Analysis., Milani M, Balconi E, Aliverti A, Mastrangelo E, Seeber F, Bolognesi M, Zanetti G, J Mol Biol. 2007 Mar 23;367(2):501-13. Epub 2007 Jan 9. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17258767 17258767]
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</div>
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[[Category: Ferredoxin--NADP(+) reductase]]
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<div class="pdbe-citations 2ok7" style="background-color:#fffaf0;"></div>
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[[Category: Plasmodium falciparum]]
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== References ==
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[[Category: Single protein]]
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<references/>
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[[Category: Bolognesi, M.]]
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__TOC__
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[[Category: Mastrangelo, E.]]
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</StructureSection>
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[[Category: Milani, M.]]
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[[Category: Large Structures]]
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[[Category: A2P]]
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[[Category: Plasmodium falciparum 3D7]]
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[[Category: FAD]]
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[[Category: Bolognesi M]]
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[[Category: NA]]
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[[Category: Mastrangelo E]]
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[[Category: disulfide-stabilized dimer]]
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[[Category: Milani M]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 21:12:17 2008''
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Current revision

Ferredoxin-NADP+ reductase from Plasmodium falciparum with 2'P-AMP

PDB ID 2ok7

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