2otd
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2otd" size="350" color="white" frame="true" align="right" spinBox="true" caption="2otd, resolution 2.60Å" /> '''The crystal structur...) |
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| - | [[Image:2otd.gif|left|200px]]<br /><applet load="2otd" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2otd, resolution 2.60Å" /> | ||
| - | '''The crystal structure of the glycerophosphodiester phosphodiesterase from Shigella flexneri 2a'''<br /> | ||
| - | == | + | ==The crystal structure of the glycerophosphodiester phosphodiesterase from Shigella flexneri 2a== |
| - | + | <StructureSection load='2otd' size='340' side='right'caption='[[2otd]], [[Resolution|resolution]] 2.60Å' scene=''> | |
| - | [ | + | == Structural highlights == |
| - | [ | + | <table><tr><td colspan='2'>[[2otd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OTD FirstGlance]. <br> |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2otd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otd OCA], [https://pdbe.org/2otd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2otd RCSB], [https://www.ebi.ac.uk/pdbsum/2otd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2otd ProSAT], [https://www.topsan.org/Proteins/MCSG/2otd TOPSAN]</span></td></tr> |
| - | [ | + | </table> |
| - | [ | + | == Evolutionary Conservation == |
| - | [[ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otd_consurf.spt"</scriptWhenChecked> | |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | |
| - | [ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[ | + | </jmolCheckbox> |
| - | [ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2otd ConSurf]. |
| - | + | <div style="clear:both"></div> | |
| - | + | ==See Also== | |
| + | *[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Shigella flexneri]] | ||
| + | [[Category: Clancy S]] | ||
| + | [[Category: Jiang S]] | ||
| + | [[Category: Joachimiak A]] | ||
| + | [[Category: Wu R]] | ||
| + | [[Category: Zhang R]] | ||
Current revision
The crystal structure of the glycerophosphodiester phosphodiesterase from Shigella flexneri 2a
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