This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ox6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2ox6" size="350" color="white" frame="true" align="right" spinBox="true" caption="2ox6, resolution 1.70&Aring;" /> '''Crystal structure of...)
Current revision (09:06, 21 February 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ox6.jpg|left|200px]]<br /><applet load="2ox6" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2ox6, resolution 1.70&Aring;" />
 
-
'''Crystal structure of gene product SO3848 from Shewanella oneidensis MR-1'''<br />
 
-
==About this Structure==
+
==Crystal structure of gene product SO3848 from Shewanella oneidensis MR-1==
-
2OX6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis] with <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OX6 OCA].
+
<StructureSection load='2ox6' size='340' side='right'caption='[[2ox6]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
[[Category: Shewanella oneidensis]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2ox6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_oneidensis_MR-1 Shewanella oneidensis MR-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OX6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OX6 FirstGlance]. <br>
-
[[Category: Bigelow, L.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
[[Category: Giuliani, S.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ox6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ox6 OCA], [https://pdbe.org/2ox6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ox6 RCSB], [https://www.ebi.ac.uk/pdbsum/2ox6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ox6 ProSAT], [https://www.topsan.org/Proteins/MCSG/2ox6 TOPSAN]</span></td></tr>
-
[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+
</table>
-
[[Category: Zhang, R.]]
+
== Function ==
-
[[Category: MG]]
+
[https://www.uniprot.org/uniprot/Q8EAP9_SHEON Q8EAP9_SHEON]
-
[[Category: mcsg]]
+
== Evolutionary Conservation ==
-
[[Category: midwest center for structural genomics]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: protein structure initiative]]
+
Check<jmol>
-
[[Category: psi-2]]
+
<jmolCheckbox>
-
[[Category: shewanella oneidensis]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/2ox6_consurf.spt"</scriptWhenChecked>
-
[[Category: structural genomics]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 21:17:15 2008''
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ox6 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Shewanella oneidensis MR-1]]
 +
[[Category: Bigelow L]]
 +
[[Category: Giuliani S]]
 +
[[Category: Joachimiak A]]
 +
[[Category: Zhang R]]

Current revision

Crystal structure of gene product SO3848 from Shewanella oneidensis MR-1

PDB ID 2ox6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools