1ppr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:10, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ppr.png|left|200px]]
 
-
<!--
+
==PERIDININ-CHLOROPHYLL-PROTEIN OF AMPHIDINIUM CARTERAE==
-
The line below this paragraph, containing "STRUCTURE_1ppr", creates the "Structure Box" on the page.
+
<StructureSection load='1ppr' size='340' side='right'caption='[[1ppr]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ppr]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Amphidinium_carterae Amphidinium carterae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PPR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PPR FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=PID:PERIDININ'>PID</scene></td></tr>
-
{{STRUCTURE_1ppr| PDB=1ppr | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ppr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ppr OCA], [https://pdbe.org/1ppr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ppr RCSB], [https://www.ebi.ac.uk/pdbsum/1ppr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ppr ProSAT]</span></td></tr>
-
 
+
</table>
-
===PERIDININ-CHLOROPHYLL-PROTEIN OF AMPHIDINIUM CARTERAE===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/PCP1_AMPCA PCP1_AMPCA] Water-soluble antenna for capture of solar energy in the blue-green range. Peridinin is an asymmetric carotenoid.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_8650577}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 8650577 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/1ppr_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_8650577}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[1ppr]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Amphidinium_carterae Amphidinium carterae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PPR OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ppr ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:008650577</ref><references group="xtra"/>
+
</StructureSection>
[[Category: Amphidinium carterae]]
[[Category: Amphidinium carterae]]
-
[[Category: Diederichs, K.]]
+
[[Category: Large Structures]]
-
[[Category: Hofmann, E.]]
+
[[Category: Diederichs K]]
-
[[Category: Welte, W.]]
+
[[Category: Hofmann E]]
-
[[Category: Carotenoid]]
+
[[Category: Welte W]]
-
[[Category: Dinoflagellate]]
+
-
[[Category: Light harvesting protein]]
+
-
[[Category: Light-harvesting protein]]
+
-
[[Category: Photosynthesis]]
+

Current revision

PERIDININ-CHLOROPHYLL-PROTEIN OF AMPHIDINIUM CARTERAE

PDB ID 1ppr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ppr"
Personal tools