2om6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2om6" size="350" color="white" frame="true" align="right" spinBox="true" caption="2om6, resolution 2.20&Aring;" /> '''Hypothetical Protein...)
Current revision (00:20, 28 December 2023) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2om6.jpg|left|200px]]<br /><applet load="2om6" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2om6, resolution 2.20&Aring;" />
 
-
'''Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) from Pyrococcus Horikoshii OT3'''<br />
 
-
==About this Structure==
+
==Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) from Pyrococcus Horikoshii OT3==
-
2OM6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii] with <scene name='pdbligand=SO4:'>SO4</scene>, <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Phosphoserine_phosphatase Phosphoserine phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.3 3.1.3.3] Known structural/functional Sites: <scene name='pdbsite=AC1:So4 Binding Site For Residue A 1300'>AC1</scene>, <scene name='pdbsite=AC2:So4 Binding Site For Residue A 1301'>AC2</scene>, <scene name='pdbsite=AC3:So4 Binding Site For Residue B 1302'>AC3</scene>, <scene name='pdbsite=AC4:Mg Binding Site For Residue B 1401'>AC4</scene>, <scene name='pdbsite=AC5:Cl Binding Site For Residue B 1402'>AC5</scene> and <scene name='pdbsite=AC6:Cl Binding Site For Residue B 1403'>AC6</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OM6 OCA].
+
<StructureSection load='2om6' size='340' side='right'caption='[[2om6]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
[[Category: Phosphoserine phosphatase]]
+
== Structural highlights ==
-
[[Category: Pyrococcus horikoshii]]
+
<table><tr><td colspan='2'>[[2om6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OM6 FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
[[Category: Baba, S.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Ebihara, A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2om6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2om6 OCA], [https://pdbe.org/2om6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2om6 RCSB], [https://www.ebi.ac.uk/pdbsum/2om6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2om6 ProSAT], [https://www.topsan.org/Proteins/RSGI/2om6 TOPSAN]</span></td></tr>
-
[[Category: Gayathri, D.]]
+
</table>
-
[[Category: Jeyakanthan, J.]]
+
== Function ==
-
[[Category: Kuramitsu, S.]]
+
[https://www.uniprot.org/uniprot/O57991_PYRHO O57991_PYRHO]
-
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
+
== Evolutionary Conservation ==
-
[[Category: Shinkai, A.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Shiro, Y.]]
+
Check<jmol>
-
[[Category: Vaijayanthimala, S.]]
+
<jmolCheckbox>
-
[[Category: Velmurugan, D.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/om/2om6_consurf.spt"</scriptWhenChecked>
-
[[Category: Yokoyama, S.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: CL]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: MG]]
+
</jmolCheckbox>
-
[[Category: SO4]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2om6 ConSurf].
-
[[Category: b-hairpin]]
+
<div style="clear:both"></div>
-
[[Category: four-helix bundle]]
+
__TOC__
-
[[Category: hydrolase]]
+
</StructureSection>
-
[[Category: national project on protein structural and functional analyses]]
+
[[Category: Large Structures]]
-
[[Category: nppsfa]]
+
[[Category: Pyrococcus horikoshii OT3]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
[[Category: Baba S]]
-
[[Category: rossmann fold]]
+
[[Category: Ebihara A]]
-
[[Category: rsgi]]
+
[[Category: Gayathri D]]
-
[[Category: structural genomics]]
+
[[Category: Jeyakanthan J]]
-
 
+
[[Category: Kuramitsu S]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 31 10:57:42 2008''
+
[[Category: Shinkai A]]
 +
[[Category: Shiro Y]]
 +
[[Category: Vaijayanthimala S]]
 +
[[Category: Velmurugan D]]
 +
[[Category: Yokoyama S]]

Current revision

Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) from Pyrococcus Horikoshii OT3

PDB ID 2om6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2om6"
Personal tools