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2owm

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(New page: 200px<br /><applet load="2owm" size="350" color="white" frame="true" align="right" spinBox="true" caption="2owm, resolution 3.25&Aring;" /> '''Motor domain of Neur...)
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[[Image:2owm.jpg|left|200px]]<br /><applet load="2owm" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2owm, resolution 3.25&Aring;" />
 
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'''Motor domain of Neurospora crassa kinesin-3 (NcKin3)'''<br />
 
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==Overview==
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==Motor domain of Neurospora crassa kinesin-3 (NcKin3)==
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Neurospora crassa kinesin NcKin3 belongs to a unique fungal-specific, subgroup of small Kinesin-3-related motor proteins. One of its functions, appears to be the transport of mitochondria along microtubules. Here, we, present the X-ray structure of a C-terminally truncated monomeric, construct of NcKin3 comprising the motor domain and the neck linker, and a, 3-D image reconstruction of this motor domain bound to microtubules, by, cryoelectron microscopy. The protein contains Mg.ADP bound to the active, site, yet the structure resembles an ATP-bound state. By comparison with, structures of the Kinesin-3 motor Kif1A in different nucleotide states, (Kikkawa, M. et al. (2001) Nature (London, U.K.) 411, 439-445), the NcKin3, structure corresponds to the AMPPCP complex of Kif1A rather than the, AMPPNP complex. NcKin3-specific differences in the coordination of the, nucleotide and asymmetric interactions between adjacent molecules in the, crystal are discussed in the context of the unusual kinetics of the, dimeric wild-type motor and the monomeric construct used for crystal, structure analysis. The NcKin3 motor decorates microtubules at a, stoichiometry of one head per alphabeta-tubulin heterodimer, thereby, forming an axial periodicity of 8 nm. In spite of unusual extensions at, the N-terminus and within flexible loops L2, L8a, and L12 (corresponding, to the K-loop of monomeric kinesins), the microtubule binding geometry is, similar to that of other members of the kinesin family.
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<StructureSection load='2owm' size='340' side='right'caption='[[2owm]], [[Resolution|resolution]] 3.25&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2owm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Neurospora_crassa Neurospora crassa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OWM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OWM FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.25&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2owm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2owm OCA], [https://pdbe.org/2owm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2owm RCSB], [https://www.ebi.ac.uk/pdbsum/2owm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2owm ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9C2M3_NEUCS Q9C2M3_NEUCS]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ow/2owm_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2owm ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Neurospora crassa kinesin NcKin3 belongs to a unique fungal-specific subgroup of small Kinesin-3-related motor proteins. One of its functions appears to be the transport of mitochondria along microtubules. Here, we present the X-ray structure of a C-terminally truncated monomeric construct of NcKin3 comprising the motor domain and the neck linker, and a 3-D image reconstruction of this motor domain bound to microtubules, by cryoelectron microscopy. The protein contains Mg.ADP bound to the active site, yet the structure resembles an ATP-bound state. By comparison with structures of the Kinesin-3 motor Kif1A in different nucleotide states (Kikkawa, M. et al. (2001) Nature (London, U.K.) 411, 439-445), the NcKin3 structure corresponds to the AMPPCP complex of Kif1A rather than the AMPPNP complex. NcKin3-specific differences in the coordination of the nucleotide and asymmetric interactions between adjacent molecules in the crystal are discussed in the context of the unusual kinetics of the dimeric wild-type motor and the monomeric construct used for crystal structure analysis. The NcKin3 motor decorates microtubules at a stoichiometry of one head per alphabeta-tubulin heterodimer, thereby forming an axial periodicity of 8 nm. In spite of unusual extensions at the N-terminus and within flexible loops L2, L8a, and L12 (corresponding to the K-loop of monomeric kinesins), the microtubule binding geometry is similar to that of other members of the kinesin family.
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==About this Structure==
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X-ray Structure and Microtubule Interaction of the Motor Domain of Neurospora crassa NcKin3, a Kinesin with Unusual Processivity(,).,Marx A, Muller J, Mandelkow EM, Woehlke G, Bouchet-Marquis C, Hoenger A, Mandelkow E Biochemistry. 2008 Feb 19;47(7):1848-1861. Epub 2008 Jan 19. PMID:18205396<ref>PMID:18205396</ref>
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2OWM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Neurospora_crassa Neurospora crassa] with <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=ADP:'>ADP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Plus-end-directed_kinesin_ATPase Plus-end-directed kinesin ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.4.4 3.6.4.4] Known structural/functional Sites: <scene name='pdbsite=AC1:Mg Binding Site For Residue A 1001'>AC1</scene>, <scene name='pdbsite=AC2:Mg Binding Site For Residue B 1001'>AC2</scene>, <scene name='pdbsite=AC3:Mg Binding Site For Residue C 1001'>AC3</scene>, <scene name='pdbsite=AC4:Mg Binding Site For Residue D 1001'>AC4</scene>, <scene name='pdbsite=AC5:Adp Binding Site For Residue A 1002'>AC5</scene>, <scene name='pdbsite=AC6:Adp Binding Site For Residue B 1002'>AC6</scene>, <scene name='pdbsite=AC7:Adp Binding Site For Residue C 1002'>AC7</scene> and <scene name='pdbsite=AC8:Adp Binding Site For Residue D 1002'>AC8</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OWM OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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X-ray Structure and Microtubule Interaction of the Motor Domain of Neurospora crassa NcKin3, a Kinesin with Unusual Processivity(,)., Marx A, Muller J, Mandelkow EM, Woehlke G, Bouchet-Marquis C, Hoenger A, Mandelkow E, Biochemistry. 2008 Jan 19;. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=18205396 18205396]
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</div>
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[[Category: Neurospora crassa]]
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<div class="pdbe-citations 2owm" style="background-color:#fffaf0;"></div>
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[[Category: Plus-end-directed kinesin ATPase]]
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[[Category: Single protein]]
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[[Category: Mandelkow, E.]]
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[[Category: Mandelkow, E.M.]]
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[[Category: Marx, A.]]
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[[Category: Muller, J.]]
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[[Category: Woehlke, G.]]
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[[Category: ADP]]
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[[Category: MG]]
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[[Category: kinesin; kinesin-3; motor domain; adp; neck linker]]
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[[Category: motor protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 31 10:58:17 2008''
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==See Also==
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*[[Kinesin 3D Structures|Kinesin 3D Structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Neurospora crassa]]
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[[Category: Mandelkow E]]
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[[Category: Mandelkow E-M]]
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[[Category: Marx A]]
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[[Category: Muller J]]
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[[Category: Woehlke G]]

Current revision

Motor domain of Neurospora crassa kinesin-3 (NcKin3)

PDB ID 2owm

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