This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3qbl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:11, 1 November 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3qbl.jpg|left|200px]]
 
-
<!--
+
==Pharaonis halorhodopsin complexed with nitrate==
-
The line below this paragraph, containing "STRUCTURE_3qbl", creates the "Structure Box" on the page.
+
<StructureSection load='3qbl' size='340' side='right'caption='[[3qbl]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3qbl]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QBL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=22B:BACTERIORUBERIN'>22B</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-
{{STRUCTURE_3qbl| PDB=3qbl | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qbl OCA], [https://pdbe.org/3qbl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qbl RCSB], [https://www.ebi.ac.uk/pdbsum/3qbl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qbl ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BACH_NATPH BACH_NATPH] Light-driven anion pump. Binding affinity for the anions is in the order, bromide > chloride > nitrate > azide > bromate and binding is pH dependent.
-
===Pharaonis halorhodopsin complexed with nitrate===
+
==See Also==
-
 
+
*[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]]
-
 
+
*[[Rhodopsin 3D structures|Rhodopsin 3D structures]]
-
==About this Structure==
+
__TOC__
-
[[3qbl]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBL OCA].
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Natronomonas pharaonis]]
[[Category: Natronomonas pharaonis]]
-
[[Category: Kanada, S.]]
+
[[Category: Kanada S]]
-
[[Category: Kouyama, T.]]
+
[[Category: Kouyama T]]
-
[[Category: Ion pump]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Retinal protein]]
+

Current revision

Pharaonis halorhodopsin complexed with nitrate

PDB ID 3qbl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools