3ti9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:28, 6 November 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 3ti9 is ON HOLD until Paper Publication
+
==Crystal structure of the basic protease BprB from the ovine footrot pathogen, Dichelobacter nodosus==
 +
<StructureSection load='3ti9' size='340' side='right'caption='[[3ti9]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3ti9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dichelobacter_nodosus Dichelobacter nodosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TI9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TI9 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ti9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ti9 OCA], [https://pdbe.org/3ti9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ti9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ti9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ti9 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q46547_DICNO Q46547_DICNO]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The ovine footrot pathogen, Dichelobacter nodosus, secretes three subtilisin-like proteases that play an important role in the pathogenesis of footrot through their ability to mediate tissue destruction. Virulent and benign strains of D. nodosus secrete the basic proteases BprV and BprB, respectively, with the catalytic domain of these enzymes having 96% sequence identity. Currently, it is not known how sequence variation between these two putative virulence factors influences their respective biological activity. We have determined the high-resolution crystal structures of BprV and BprB. These data reveal that that the S1 pocket of BprV is more hydrophobic, but smaller than that of BprB. We show that BprV is more effective in degrading extracellular matrix components of the host tissue than BprB. Mutation of two residues around the S1 pocket of BprB to the equivalent residues in BprV dramatically enhanced its proteolytic activity against elastin substrates. Application of a novel approach for profiling substrate specificity, the Rapid Endopeptidase Profiling Library (REPLi) method, revealed that both enzymes prefer cleaving after hydrophobic residues (and in particular P1 leucine) but that BprV has more restricted primary substrate specificity than BprB. Furthermore, for P1-Leu containing substrates we found that BprV is a significantly more efficient enzyme than BprB. Collectively, these data illuminate how subtle changes in D. nodosus proteases may significantly influence tissue destruction as part of the ovine footrot pathogenesis process.
-
Authors: Wong, W., Whisstock, J.C., Porter, C.J.
+
The S1 pocket of a bacterial derived subtilisin-like protease underpins effective tissue destruction.,Wong W, Wijeyewickrema LC, Kennan RM, Reeve SB, Steer DL, Reboul C, Smith AI, Pike RN, Rood JI, Whisstock JC, Porter CJ J Biol Chem. 2011 Oct 11. PMID:21990366<ref>PMID:21990366</ref>
-
Description: Crystal structure of the basic protease BprB from the ovine footrot pathogen, Dichelobacter nodosus
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 3ti9" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Dichelobacter nodosus]]
 +
[[Category: Large Structures]]
 +
[[Category: Porter CJ]]
 +
[[Category: Whisstock JC]]
 +
[[Category: Wong W]]

Current revision

Crystal structure of the basic protease BprB from the ovine footrot pathogen, Dichelobacter nodosus

PDB ID 3ti9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools