1b0i

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[[Image:1b0i.gif|left|200px]]<br /><applet load="1b0i" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="1b0i, resolution 2.4&Aring;" />
 
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'''ALPHA-AMYLASE FROM ALTEROMONAS HALOPLANCTIS'''<br />
 
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==Overview==
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==ALPHA-AMYLASE FROM ALTEROMONAS HALOPLANCTIS==
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Background:. Enzymes from psychrophilic (cold-adapted) microorganisms, operate at temperatures close to 0 degreesC, where the activity of their, mesophilic and thermophilic counterparts is drastically reduced. It has, generally been assumed that thermophily is associated with rigid proteins, whereas psychrophilic enzymes have a tendency to be more flexible., Results:. Insights into the cold adaptation of proteins are gained on the, basis of a psychrophilic protein's molecular structure. To this end, we, have determined the structure of the recombinant form of a psychrophilic, alpha-amylase from Alteromonas haloplanctis at 2.4 A resolution. We have, compared this with the structure of the wild-type enzyme, recently solved, at 2.0 A resolution, and with available structures of their mesophilic, counterparts. These comparative studies have enabled us to identify, possible determinants of cold adaptation. Conclusions:. We propose that an, increased resilience of the molecular surface and a less rigid protein, core, with less interdomain interactions, are determining factors of the, conformational flexibility that allows efficient enzyme catalysis in cold, environments.
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<StructureSection load='1b0i' size='340' side='right'caption='[[1b0i]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1b0i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B0I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1B0I FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1b0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b0i OCA], [https://pdbe.org/1b0i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1b0i RCSB], [https://www.ebi.ac.uk/pdbsum/1b0i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1b0i ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/AMY_PSEHA AMY_PSEHA]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b0/1b0i_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1b0i ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Background:. Enzymes from psychrophilic (cold-adapted) microorganisms operate at temperatures close to 0 degreesC, where the activity of their mesophilic and thermophilic counterparts is drastically reduced. It has generally been assumed that thermophily is associated with rigid proteins, whereas psychrophilic enzymes have a tendency to be more flexible. Results:. Insights into the cold adaptation of proteins are gained on the basis of a psychrophilic protein's molecular structure. To this end, we have determined the structure of the recombinant form of a psychrophilic alpha-amylase from Alteromonas haloplanctis at 2.4 A resolution. We have compared this with the structure of the wild-type enzyme, recently solved at 2.0 A resolution, and with available structures of their mesophilic counterparts. These comparative studies have enabled us to identify possible determinants of cold adaptation. Conclusions:. We propose that an increased resilience of the molecular surface and a less rigid protein core, with less interdomain interactions, are determining factors of the conformational flexibility that allows efficient enzyme catalysis in cold environments.
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==About this Structure==
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Structures of the psychrophilic Alteromonas haloplanctis alpha-amylase give insights into cold adaptation at a molecular level.,Aghajari N, Feller G, Gerday C, Haser R Structure. 1998 Dec 15;6(12):1503-16. PMID:9862804<ref>PMID:9862804</ref>
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1B0I is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis] with <scene name='pdbligand=CA:'>CA</scene> and <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Alpha-amylase Alpha-amylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.1 3.2.1.1] Known structural/functional Sites: <scene name='pdbsite=ACT:Active+Site'>ACT</scene>, <scene name='pdbsite=CAB:Ca+Binding+Site'>CAB</scene> and <scene name='pdbsite=CLB:Chloride+Binding+Site'>CLB</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B0I OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structures of the psychrophilic Alteromonas haloplanctis alpha-amylase give insights into cold adaptation at a molecular level., Aghajari N, Feller G, Gerday C, Haser R, Structure. 1998 Dec 15;6(12):1503-16. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9862804 9862804]
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</div>
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[[Category: Alpha-amylase]]
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<div class="pdbe-citations 1b0i" style="background-color:#fffaf0;"></div>
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[[Category: Pseudoalteromonas haloplanktis]]
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[[Category: Single protein]]
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[[Category: Aghajari, N.]]
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[[Category: Haser, R.]]
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[[Category: CA]]
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[[Category: CL]]
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[[Category: 4-glucan-4-glucanohydrolase]]
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[[Category: alpha-1]]
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[[Category: alpha-amylase]]
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[[Category: beta-alpha-eight barrel]]
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[[Category: psychrophilic enzyme]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 09:32:18 2008''
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==See Also==
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*[[Amylase 3D structures|Amylase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Pseudoalteromonas haloplanktis]]
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[[Category: Aghajari N]]
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[[Category: Haser R]]

Current revision

ALPHA-AMYLASE FROM ALTEROMONAS HALOPLANCTIS

PDB ID 1b0i

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