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3kyv

From Proteopedia

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[[Image:3kyv.png|left|200px]]
 
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==Denovo X-ray crystal structure determination of H-labeled perdeuterated rubredoxin at 100K==
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The line below this paragraph, containing "STRUCTURE_3kyv", creates the "Structure Box" on the page.
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<StructureSection load='3kyv' size='340' side='right'caption='[[3kyv]], [[Resolution|resolution]] 1.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3kyv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KYV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KYV FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
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{{STRUCTURE_3kyv| PDB=3kyv | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kyv OCA], [https://pdbe.org/3kyv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kyv RCSB], [https://www.ebi.ac.uk/pdbsum/3kyv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kyv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RUBR_PYRFU RUBR_PYRFU] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ky/3kyv_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kyv ConSurf].
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<div style="clear:both"></div>
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===Denovo X-ray crystal structure determination of H-labeled perdeuterated rubredoxin at 100K===
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==See Also==
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*[[Rubredoxin 3D structures|Rubredoxin 3D structures]]
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*[[Rubredoxin PDB structures|Rubredoxin PDB structures]]
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__TOC__
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The line below this paragraph, {{ABSTRACT_PUBMED_20445231}}, adds the Publication Abstract to the page
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</StructureSection>
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(as it appears on PubMed at http://www.pubmed.gov), where 20445231 is the PubMed ID number.
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[[Category: Large Structures]]
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{{ABSTRACT_PUBMED_20445231}}
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==About this Structure==
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[[3kyv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KYV OCA].
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==Reference==
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<ref group="xtra">PMID:020445231</ref><references group="xtra"/>
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[[Category: Pyrococcus furiosus]]
[[Category: Pyrococcus furiosus]]
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[[Category: Gardberg, A S.]]
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[[Category: Gardberg AS]]
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[[Category: Electron transport]]
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[[Category: Iron]]
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[[Category: Metal-binding]]
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[[Category: Selective perdeuteration]]
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[[Category: Transport]]
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Current revision

Denovo X-ray crystal structure determination of H-labeled perdeuterated rubredoxin at 100K

PDB ID 3kyv

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