1bvw

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[[Image:1bvw.gif|left|200px]]<br /><applet load="1bvw" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="1bvw, resolution 1.92&Aring;" />
 
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'''CELLOBIOHYDROLASE II (CEL6A) FROM HUMICOLA INSOLENS'''<br />
 
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==Overview==
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==CELLOBIOHYDROLASE II (CEL6A) FROM HUMICOLA INSOLENS==
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The three-dimensional structure of the catalytic core of the family 6, cellobiohydrolase II, Cel6A (CBH II), from Humicola insolens has been, determined by X-ray crystallography at a resolution of 1.92 A. The, structure was solved by molecular replacement using the homologous, Trichoderma reesei CBH II as a search model. The H. insolens enzyme, displays a high degree of structural similarity with its T. reesei, equivalent. The structure features both O- (alpha-linked mannose) and, N-linked glycosylation and a hexa-co-ordinate Mg2+ ion. The active-site, residues are located within the enclosed tunnel that is typical for, cellobiohydrolase enzymes and which may permit a processive hydrolysis of, the cellulose substrate. The close structural similarity between the two, enzymes implies that kinetics and chain-end specificity experiments, performed on the H. insolens enzyme are likely to be applicable to the, homologous T. reesei enzyme. These cast doubt on the description of, cellobiohydrolases as exo-enzymes since they demonstrated that Cel6A (CBH, II) shows no requirement for non-reducing chain-ends, as had been, presumed. There is no crystallographic evidence in the present structure, to support a mechanism involving loop opening, yet preliminary modelling, experiments suggest that the active-site tunnel of Cel6A (CBH II) is too, narrow to permit entry of a fluorescenyl-derivatized substrate, known to, be a viable substrate for this enzyme.
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<StructureSection load='1bvw' size='340' side='right'caption='[[1bvw]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1bvw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Humicola_insolens Humicola insolens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BVW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BVW FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.92&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bvw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bvw OCA], [https://pdbe.org/1bvw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bvw RCSB], [https://www.ebi.ac.uk/pdbsum/1bvw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bvw ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GUX6_HUMIN GUX6_HUMIN] Plays a central role in the recycling of plant biomass. The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.<ref>PMID:9882628</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/1bvw_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bvw ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The three-dimensional structure of the catalytic core of the family 6 cellobiohydrolase II, Cel6A (CBH II), from Humicola insolens has been determined by X-ray crystallography at a resolution of 1.92 A. The structure was solved by molecular replacement using the homologous Trichoderma reesei CBH II as a search model. The H. insolens enzyme displays a high degree of structural similarity with its T. reesei equivalent. The structure features both O- (alpha-linked mannose) and N-linked glycosylation and a hexa-co-ordinate Mg2+ ion. The active-site residues are located within the enclosed tunnel that is typical for cellobiohydrolase enzymes and which may permit a processive hydrolysis of the cellulose substrate. The close structural similarity between the two enzymes implies that kinetics and chain-end specificity experiments performed on the H. insolens enzyme are likely to be applicable to the homologous T. reesei enzyme. These cast doubt on the description of cellobiohydrolases as exo-enzymes since they demonstrated that Cel6A (CBH II) shows no requirement for non-reducing chain-ends, as had been presumed. There is no crystallographic evidence in the present structure to support a mechanism involving loop opening, yet preliminary modelling experiments suggest that the active-site tunnel of Cel6A (CBH II) is too narrow to permit entry of a fluorescenyl-derivatized substrate, known to be a viable substrate for this enzyme.
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==About this Structure==
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Crystal structure of the catalytic core domain of the family 6 cellobiohydrolase II, Cel6A, from Humicola insolens, at 1.92 A resolution.,Varrot A, Hastrup S, Schulein M, Davies GJ Biochem J. 1999 Jan 15;337 ( Pt 2):297-304. PMID:9882628<ref>PMID:9882628</ref>
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1BVW is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Humicola_insolens Humicola insolens] with <scene name='pdbligand=MAN:'>MAN</scene>, <scene name='pdbligand=NAG:'>NAG</scene>, <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Cellulose_1,4-beta-cellobiosidase Cellulose 1,4-beta-cellobiosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.91 3.2.1.91] Known structural/functional Sites: <scene name='pdbsite=ACI:Catalytic+Proton+Donor+(Experimental)'>ACI</scene>, <scene name='pdbsite=BAS:Catalytic+Base+(Proposed)'>BAS</scene> and <scene name='pdbsite=MOD:Pka+Modulator'>MOD</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BVW OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of the catalytic core domain of the family 6 cellobiohydrolase II, Cel6A, from Humicola insolens, at 1.92 A resolution., Varrot A, Hastrup S, Schulein M, Davies GJ, Biochem J. 1999 Jan 15;337 ( Pt 2):297-304. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9882628 9882628]
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</div>
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[[Category: Cellulose 1,4-beta-cellobiosidase]]
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<div class="pdbe-citations 1bvw" style="background-color:#fffaf0;"></div>
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[[Category: Humicola insolens]]
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[[Category: Single protein]]
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[[Category: Davies, G.J.]]
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[[Category: Schulein, M.]]
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[[Category: Varrot, A.]]
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[[Category: GOL]]
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[[Category: MAN]]
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[[Category: MG]]
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[[Category: NAG]]
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[[Category: cellobiohydrolase]]
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[[Category: cellulase]]
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[[Category: cellulose degradation]]
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[[Category: glycoside hydrolase family 6]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 09:34:04 2008''
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==See Also==
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*[[Cellobiohydrolase 3D structures|Cellobiohydrolase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Humicola insolens]]
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[[Category: Large Structures]]
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[[Category: Davies GJ]]
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[[Category: Schulein M]]
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[[Category: Varrot A]]

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CELLOBIOHYDROLASE II (CEL6A) FROM HUMICOLA INSOLENS

PDB ID 1bvw

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