3qap

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:46, 21 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3qap.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of Natronomonas pharaonis sensory rhodopsin II in the ground state==
-
The line below this paragraph, containing "STRUCTURE_3qap", creates the "Structure Box" on the page.
+
<StructureSection load='3qap' size='340' side='right'caption='[[3qap]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3qap]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QAP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QAP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=L2P:2,3-DI-PHYTANYL-GLYCEROL'>L2P</scene>, <scene name='pdbligand=LFA:EICOSANE'>LFA</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-
{{STRUCTURE_3qap| PDB=3qap | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qap OCA], [https://pdbe.org/3qap PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qap RCSB], [https://www.ebi.ac.uk/pdbsum/3qap PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qap ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BACS2_NATPH BACS2_NATPH] Involved in the control of phototaxis. Seems to activate a methyl-accepting protein (HTR-II). Photoreceptor for blue light.
-
===Crystal structure of Natronomonas pharaonis sensory rhodopsin II in the ground state===
+
==See Also==
-
 
+
*[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]]
-
 
+
*[[Rhodopsin 3D structures|Rhodopsin 3D structures]]
-
<!--
+
__TOC__
-
The line below this paragraph, {{ABSTRACT_PUBMED_21840321}}, adds the Publication Abstract to the page
+
</StructureSection>
-
(as it appears on PubMed at http://www.pubmed.gov), where 21840321 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
-
{{ABSTRACT_PUBMED_21840321}}
+
-
 
+
-
==About this Structure==
+
-
[[3qap]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QAP OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:021840321</ref><references group="xtra"/>
+
[[Category: Natronomonas pharaonis]]
[[Category: Natronomonas pharaonis]]
-
[[Category: Borshchevskiy, V.]]
+
[[Category: Borshchevskiy V]]
-
[[Category: Buldt, G.]]
+
[[Category: Buldt G]]
-
[[Category: Engelhard, M.]]
+
[[Category: Engelhard M]]
-
[[Category: Gordeliy, V.]]
+
[[Category: Gordeliy V]]
-
[[Category: Grudinin, S.]]
+
[[Category: Grudinin S]]
-
[[Category: Gushchin, I.]]
+
[[Category: Gushchin I]]
-
[[Category: Ishchenko, A.]]
+
[[Category: Ishchenko A]]
-
[[Category: Reshetnyak, A.]]
+
[[Category: Reshetnyak A]]
-
[[Category: Round, E.]]
+
[[Category: Round E]]
-
[[Category: Membrane]]
+
-
[[Category: Nphtrii]]
+
-
[[Category: Phototaxis]]
+
-
[[Category: Transport protein]]
+

Current revision

Crystal structure of Natronomonas pharaonis sensory rhodopsin II in the ground state

PDB ID 3qap

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools