2wlq

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[[Image:2wlq.png|left|200px]]
 
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==Nucleophile-disabled Lam16A mutant holds laminariheptaose (L7) in a cyclical conformation==
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The line below this paragraph, containing "STRUCTURE_2wlq", creates the "Structure Box" on the page.
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<StructureSection load='2wlq' size='340' side='right'caption='[[2wlq]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2wlq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phanerodontia_chrysosporium Phanerodontia chrysosporium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WLQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WLQ FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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{{STRUCTURE_2wlq| PDB=2wlq | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wlq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wlq OCA], [https://pdbe.org/2wlq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wlq RCSB], [https://www.ebi.ac.uk/pdbsum/2wlq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wlq ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q874E3_PHACH Q874E3_PHACH]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wl/2wlq_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wlq ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Glycosynthases are precise molecular instruments for making specifically linked oligosaccharides. X-ray crystallography screening of ligands bound to the 1,3(4)-beta-d-glucanase nucleophile mutant E115S of Phanerochaete chrysosporium Laminarinase 16A (Lam16A) showed that laminariheptaose (L7) bound in an arch with the reducing and nonreducing ends occupying either side of the catalytic cleft of the enzyme. The X-ray structure of Lam16A E115S in complex with alpha-laminariheptaosyl fluoride (alphaL7F) revealed how alphaL7F could make a nucleophilic attack upon itself. Indeed, when Lam16A E115S was allowed to react with alphaL7F the major product was a cyclic beta-1,3-heptaglucan, as shown by mass spectrometry. NMR confirmed uniquely beta-1,3-linkages and no reducing end. Molecular dynamics simulations indicate that the cyclic laminariheptaose molecule is not completely planar and that torsion angles at the glycosidic linkages fluctuate between two energy minima. This is the first report of a glycosynthase that joins the reducing and nonreducing ends of a single oligosaccharide and the first reported synthesis of cyclic beta-glucan.
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===NUCLEOPHILE-DISABLED LAM16A MUTANT HOLDS LAMINARIHEPTAOSE (L7) IN A CYCLICAL CONFORMATION===
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Synthesis of Cyclic beta-Glucan Using Laminarinase 16A Glycosynthase Mutant from the Basidiomycete Phanerochaete chrysosporium.,Vasur J, Kawai R, Jonsson KH, Widmalm G, Engstrom A, Frank M, Andersson E, Hansson H, Forsberg Z, Igarashi K, Samejima M, Sandgren M, Stahlberg J J Am Chem Soc. 2010 Jan 15. PMID:20078120<ref>PMID:20078120</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_20078120}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2wlq" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 20078120 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20078120}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[2wlq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Phanerochaete_chrysosporium Phanerochaete chrysosporium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WLQ OCA].
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[[Category: Phanerodontia chrysosporium]]
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[[Category: Andersson E]]
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==Reference==
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[[Category: Engstrom A]]
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<ref group="xtra">PMID:020078120</ref><references group="xtra"/>
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[[Category: Hansson H]]
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[[Category: Phanerochaete chrysosporium]]
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[[Category: Igarashi K]]
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[[Category: Andersson, E.]]
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[[Category: Jonsson KH]]
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[[Category: Engstrom, A.]]
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[[Category: Kawai R]]
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[[Category: Hansson, H.]]
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[[Category: Samejima M]]
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[[Category: Igarashi, K.]]
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[[Category: Sandgren M]]
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[[Category: Jonsson, K H.]]
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[[Category: Stahlberg J]]
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[[Category: Kawai, R.]]
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[[Category: Vasur J]]
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[[Category: Samejima, M.]]
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[[Category: Widmalm G]]
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[[Category: Sandgren, M.]]
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[[Category: Stahlberg, J.]]
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[[Category: Vasur, J.]]
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[[Category: Widmalm, G.]]
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[[Category: 6-glucan]]
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[[Category: Basidiomycete]]
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[[Category: Beta sandwich]]
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[[Category: Beta-1\]]
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[[Category: Beta-glucanase]]
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[[Category: Cyclical poysaccharide]]
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[[Category: Family 16]]
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[[Category: Gh16]]
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[[Category: Gh7]]
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[[Category: Glycosyl hydrolase]]
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[[Category: Hydrolase]]
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[[Category: Lam16a]]
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[[Category: Laminarin]]
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Current revision

Nucleophile-disabled Lam16A mutant holds laminariheptaose (L7) in a cyclical conformation

PDB ID 2wlq

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