1dz9

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[[Image:1dz9.gif|left|200px]]<br /><applet load="1dz9" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="1dz9, resolution 1.9&Aring;" />
 
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'''PUTATIVE OXO COMPLEX OF P450CAM FROM PSEUDOMONAS PUTIDA'''<br />
 
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==Overview==
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==Putative oxo complex of P450cam from Pseudomonas putida==
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Members of the cytochrome P450 superfamily catalyze the addition of, molecular oxygen to nonactivated hydrocarbons at physiological, temperature-a reaction that requires high temperature to proceed in the, absence of a catalyst. Structures were obtained for three intermediates in, the hydroxylation reaction of camphor by P450cam with trapping techniques, and cryocrystallography. The structure of the ferrous dioxygen adduct of, P450cam was determined with 0.91 angstrom wavelength x-rays; irradiation, with 1.5 angstrom x-rays results in breakdown of the dioxygen molecule to, an intermediate that would be consistent with an oxyferryl species. The, structures show conformational changes in several important residues and, reveal a network of bound water molecules that may provide the protons, needed for the reaction.
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<StructureSection load='1dz9' size='340' side='right'caption='[[1dz9]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1dz9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DZ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DZ9 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CAM:CAMPHOR'>CAM</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dz9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dz9 OCA], [https://pdbe.org/1dz9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dz9 RCSB], [https://www.ebi.ac.uk/pdbsum/1dz9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dz9 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CPXA_PSEPU CPXA_PSEPU] Involved in a camphor oxidation system.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dz/1dz9_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dz9 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Members of the cytochrome P450 superfamily catalyze the addition of molecular oxygen to nonactivated hydrocarbons at physiological temperature-a reaction that requires high temperature to proceed in the absence of a catalyst. Structures were obtained for three intermediates in the hydroxylation reaction of camphor by P450cam with trapping techniques and cryocrystallography. The structure of the ferrous dioxygen adduct of P450cam was determined with 0.91 angstrom wavelength x-rays; irradiation with 1.5 angstrom x-rays results in breakdown of the dioxygen molecule to an intermediate that would be consistent with an oxyferryl species. The structures show conformational changes in several important residues and reveal a network of bound water molecules that may provide the protons needed for the reaction.
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==About this Structure==
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The catalytic pathway of cytochrome p450cam at atomic resolution.,Schlichting I, Berendzen J, Chu K, Stock AM, Maves SA, Benson DE, Sweet RM, Ringe D, Petsko GA, Sligar SG Science. 2000 Mar 3;287(5458):1615-22. PMID:10698731<ref>PMID:10698731</ref>
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1DZ9 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida] with <scene name='pdbligand=K:'>K</scene>, <scene name='pdbligand=HEM:'>HEM</scene>, <scene name='pdbligand=O:'>O</scene>, <scene name='pdbligand=CAM:'>CAM</scene> and <scene name='pdbligand=TRS:'>TRS</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=K1:This+Is+The+Intramolecular+K+Binding+Site+For+Monomer+A+...'>K1</scene>, <scene name='pdbsite=K2:This+Is+The+Intramolecular+K+Binding+Site+For+Monomer+B+...'>K2</scene>, <scene name='pdbsite=K3:Intermolecular+K+Site'>K3</scene> and <scene name='pdbsite=OXO:O'>OXO</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DZ9 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The catalytic pathway of cytochrome p450cam at atomic resolution., Schlichting I, Berendzen J, Chu K, Stock AM, Maves SA, Benson DE, Sweet RM, Ringe D, Petsko GA, Sligar SG, Science. 2000 Mar 3;287(5458):1615-22. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10698731 10698731]
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</div>
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[[Category: Pseudomonas putida]]
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<div class="pdbe-citations 1dz9" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Benson, D.E.]]
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[[Category: Berendzen, J.]]
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[[Category: Chu, K.]]
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[[Category: Maves, S.A.]]
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[[Category: Petsko, G.A.]]
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[[Category: Ringe, D.]]
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[[Category: Schlichting, I.]]
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[[Category: Sligar, S.G.]]
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[[Category: Stock, A.M.]]
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[[Category: Sweet, R.M.]]
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[[Category: CAM]]
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[[Category: HEM]]
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[[Category: K]]
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[[Category: O]]
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[[Category: TRS]]
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[[Category: heme]]
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[[Category: mono-oxygenase]]
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[[Category: reaction intermediate]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 09:36:12 2008''
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==See Also==
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*[[Cytochrome P450 3D structures|Cytochrome P450 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Pseudomonas putida]]
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[[Category: Benson DE]]
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[[Category: Berendzen J]]
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[[Category: Chu K]]
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[[Category: Maves SA]]
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[[Category: Petsko GA]]
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[[Category: Ringe D]]
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[[Category: Schlichting I]]
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[[Category: Sligar SG]]
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[[Category: Stock AM]]
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[[Category: Sweet RM]]

Current revision

Putative oxo complex of P450cam from Pseudomonas putida

PDB ID 1dz9

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