1eu1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1eu1" [edit=sysop:move=sysop])
Current revision (10:06, 20 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1eu1.png|left|200px]]
 
-
<!--
+
==THE CRYSTAL STRUCTURE OF RHODOBACTER SPHAEROIDES DIMETHYLSULFOXIDE REDUCTASE REVEALS TWO DISTINCT MOLYBDENUM COORDINATION ENVIRONMENTS.==
-
The line below this paragraph, containing "STRUCTURE_1eu1", creates the "Structure Box" on the page.
+
<StructureSection load='1eu1' size='340' side='right'caption='[[1eu1]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1eu1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1cxs 1cxs] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1cxt 1cxt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EU1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EU1 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6MO:MOLYBDENUM(VI)+ION'>6MO</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1eu1| PDB=1eu1 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1eu1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eu1 OCA], [https://pdbe.org/1eu1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1eu1 RCSB], [https://www.ebi.ac.uk/pdbsum/1eu1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eu1 ProSAT]</span></td></tr>
-
 
+
</table>
-
===THE CRYSTAL STRUCTURE OF RHODOBACTER SPHAEROIDES DIMETHYLSULFOXIDE REDUCTASE REVEALS TWO DISTINCT MOLYBDENUM COORDINATION ENVIRONMENTS.===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/DSTOR_CERSP DSTOR_CERSP] Catalyzes the reduction of dimethyl sulfoxide (DMSO) and trimethylamine N-oxide (TMAO) to dimethyl sulfide (DMS) and trimethylamine, respectively. The terminal DMSO reductase can also use various sulfoxides and N-oxide compounds as terminal electron acceptor in addition to DMSO and TMAO.<ref>PMID:9401017</ref>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[1eu1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. This structure supersedes the now removed PDB entries and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1cxt 1cxt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EU1 OCA].
+
Check<jmol>
-
[[Category: Rhodobacter sphaeroides]]
+
<jmolCheckbox>
-
[[Category: Li, H K.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eu/1eu1_consurf.spt"</scriptWhenChecked>
-
[[Category: Rajagopalan, K V.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Schindelin, H.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Temple, K.]]
+
</jmolCheckbox>
-
[[Category: Dmso]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1eu1 ConSurf].
-
[[Category: Mgd]]
+
<div style="clear:both"></div>
-
[[Category: Molybdenum]]
+
== References ==
-
[[Category: Molybdenum cofactor]]
+
<references/>
-
[[Category: Molybdopterin]]
+
__TOC__
-
[[Category: Oxidoreductase]]
+
</StructureSection>
-
[[Category: Reductase]]
+
[[Category: Cereibacter sphaeroides]]
 +
[[Category: Large Structures]]
 +
[[Category: Li HK]]
 +
[[Category: Rajagopalan KV]]
 +
[[Category: Schindelin H]]
 +
[[Category: Temple K]]

Current revision

THE CRYSTAL STRUCTURE OF RHODOBACTER SPHAEROIDES DIMETHYLSULFOXIDE REDUCTASE REVEALS TWO DISTINCT MOLYBDENUM COORDINATION ENVIRONMENTS.

PDB ID 1eu1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools