1gqw

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[[Image:1gqw.jpg|left|200px]]<br /><applet load="1gqw" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="1gqw, resolution 3.00&Aring;" />
 
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'''TAURINE/ALPHA-KETOGLUTARATE DIOXYGENASE FROM ESCHERICHIA COLI'''<br />
 
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==Overview==
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==Taurine/alpha-ketoglutarate Dioxygenase from Escherichia coli==
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Taurine/alpha-ketoglutarate dioxygenase (TauD), a non-heme Fe(II), oxygenase, catalyses the conversion of taurine (2-aminoethanesulfonate) to, sulfite and aminoacetaldehyde concurrent with the conversion of, alpha-ketoglutarate (alphaKG) to succinate and CO(2). The enzyme allows, Escherichia coli to use taurine, widely available in the environment, as, an alternative sulfur source. Here we describe the X-ray crystal structure, of TauD complexed to Fe(II) and both substrates, alphaKG and taurine. The, tertiary structure and fold of TauD are similar to those observed in other, enzymes from the broad family of Fe(II)/alphaKG-dependent oxygenases, with, closest structural similarity to clavaminate synthase. Using the TauD, coordinates, a model was determined for the closely related enzyme, 2,4-dichlorophenoxyacetate/alphaKG dioxygenase (TfdA), supporting, predictions derived from site-directed mutagenesis and other studies of, that biodegradative protein. The TauD structure and TfdA model define the, metal ligands and the positions of nearby aromatic residues that undergo, post-translational modifications involving self-hydroxylation reactions., The substrate binding residues of TauD were identified and those of TfdA, predicted. These results, along with sequence alignment information, reveal how TauD selects a tetrahedral substrate anion in preference to the, planar carboxylate selected by TfdA, providing insight into the mechanism, of enzyme catalysis.
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<StructureSection load='1gqw' size='340' side='right'caption='[[1gqw]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1gqw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GQW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GQW FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=TAU:2-AMINOETHANESULFONIC+ACID'>TAU</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gqw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gqw OCA], [https://pdbe.org/1gqw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gqw RCSB], [https://www.ebi.ac.uk/pdbsum/1gqw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gqw ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TAUD_ECOLI TAUD_ECOLI] Catalyzes the conversion of taurine and alpha ketoglutarate to sulfite, aminoacetaldehyde and succinate. Required for the utilization of taurine (2-aminoethanesulfonic acid) as an alternative sulfur source. Pentane-sulfonic acid, 3-(N-morpholino)propanesulfonic acid and 1,3-dioxo-2-isoindolineethanesulfonic acid are also substrates for this enzyme.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gq/1gqw_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gqw ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Taurine/alpha-ketoglutarate dioxygenase (TauD), a non-heme Fe(II) oxygenase, catalyses the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrent with the conversion of alpha-ketoglutarate (alphaKG) to succinate and CO(2). The enzyme allows Escherichia coli to use taurine, widely available in the environment, as an alternative sulfur source. Here we describe the X-ray crystal structure of TauD complexed to Fe(II) and both substrates, alphaKG and taurine. The tertiary structure and fold of TauD are similar to those observed in other enzymes from the broad family of Fe(II)/alphaKG-dependent oxygenases, with closest structural similarity to clavaminate synthase. Using the TauD coordinates, a model was determined for the closely related enzyme 2,4-dichlorophenoxyacetate/alphaKG dioxygenase (TfdA), supporting predictions derived from site-directed mutagenesis and other studies of that biodegradative protein. The TauD structure and TfdA model define the metal ligands and the positions of nearby aromatic residues that undergo post-translational modifications involving self-hydroxylation reactions. The substrate binding residues of TauD were identified and those of TfdA predicted. These results, along with sequence alignment information, reveal how TauD selects a tetrahedral substrate anion in preference to the planar carboxylate selected by TfdA, providing insight into the mechanism of enzyme catalysis.
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==About this Structure==
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X-ray crystal structure of Escherichia coli taurine/alpha-ketoglutarate dioxygenase complexed to ferrous iron and substrates.,Elkins JM, Ryle MJ, Clifton IJ, Dunning Hotopp JC, Lloyd JS, Burzlaff NI, Baldwin JE, Hausinger RP, Roach PL Biochemistry. 2002 Apr 23;41(16):5185-92. PMID:11955067<ref>PMID:11955067</ref>
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1GQW is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=FE2:'>FE2</scene>, <scene name='pdbligand=TAU:'>TAU</scene> and <scene name='pdbligand=AKG:'>AKG</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Taurine_dioxygenase Taurine dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.11.17 1.14.11.17] Known structural/functional Site: <scene name='pdbsite=FEA:Akg+Binding+Site+For+Chain+B'>FEA</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GQW OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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X-ray crystal structure of Escherichia coli taurine/alpha-ketoglutarate dioxygenase complexed to ferrous iron and substrates., Elkins JM, Ryle MJ, Clifton IJ, Dunning Hotopp JC, Lloyd JS, Burzlaff NI, Baldwin JE, Hausinger RP, Roach PL, Biochemistry. 2002 Apr 23;41(16):5185-92. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11955067 11955067]
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</div>
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[[Category: Escherichia coli]]
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<div class="pdbe-citations 1gqw" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Taurine dioxygenase]]
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[[Category: Baldwin, J.E.]]
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[[Category: Burzlaff, N.I.]]
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[[Category: Clifton, I.J.]]
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[[Category: Dunning-Hotopp, J.C.]]
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[[Category: Elkins, J.M.]]
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[[Category: Hausinger, R.P.]]
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[[Category: Lloyd, J.S.]]
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[[Category: Roach, P.L.]]
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[[Category: Ryle, M.J.]]
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[[Category: AKG]]
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[[Category: FE2]]
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[[Category: TAU]]
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[[Category: alpha-ketoglutarate]]
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[[Category: dioxygenase]]
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[[Category: oxidoreductase]]
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[[Category: oxygenase]]
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[[Category: sulphur metabolism]]
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[[Category: taud]]
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[[Category: taurine]]
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[[Category: tfda]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 09:42:01 2008''
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==See Also==
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*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Escherichia coli]]
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[[Category: Large Structures]]
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[[Category: Baldwin JE]]
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[[Category: Burzlaff NI]]
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[[Category: Clifton IJ]]
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[[Category: Dunning-Hotopp JC]]
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[[Category: Elkins JM]]
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[[Category: Hausinger RP]]
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[[Category: Lloyd JS]]
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[[Category: Roach PL]]
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[[Category: Ryle MJ]]

Current revision

Taurine/alpha-ketoglutarate Dioxygenase from Escherichia coli

PDB ID 1gqw

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