1ysp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1ysp" [edit=sysop:move=sysop])
Current revision (08:59, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ysp.png|left|200px]]
 
-
<!--
+
==Crystal structure of the C-terminal domain of E. coli transcriptional regulator KdgR.==
-
The line below this paragraph, containing "STRUCTURE_1ysp", creates the "Structure Box" on the page.
+
<StructureSection load='1ysp' size='340' side='right'caption='[[1ysp]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ysp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YSP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YSP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1ysp| PDB=1ysp | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ysp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ysp OCA], [https://pdbe.org/1ysp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ysp RCSB], [https://www.ebi.ac.uk/pdbsum/1ysp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ysp ProSAT], [https://www.topsan.org/Proteins/MCSG/1ysp TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of the C-terminal domain of E. coli transcriptional regulator KdgR.===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/KDGR_ECOLI KDGR_ECOLI] Transcriptional regulator of the kdgK gene for the kdg kinase and the kdgT gene for the kdg permease.
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[1ysp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YSP OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ys/1ysp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ysp ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Bochkarev, A.]]
+
[[Category: Large Structures]]
-
[[Category: Borek, D.]]
+
[[Category: Bochkarev A]]
-
[[Category: Evdokimova, E.]]
+
[[Category: Borek D]]
-
[[Category: Ezersky, A.]]
+
[[Category: Evdokimova E]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Ezersky A]]
-
[[Category: Lunin, V V.]]
+
[[Category: Joachimiak A]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Lunin VV]]
-
[[Category: Savchenko, A.]]
+
[[Category: Savchenko A]]
-
[[Category: Skarina, T.]]
+
[[Category: Skarina T]]
-
[[Category: Xu, X.]]
+
[[Category: Xu X]]
-
[[Category: Iclr]]
+
-
[[Category: Kdgr]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Midwest center for structural genomic]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcriptional regulator]]
+

Current revision

Crystal structure of the C-terminal domain of E. coli transcriptional regulator KdgR.

PDB ID 1ysp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools