2xnv

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[[Image:2xnv.png|left|200px]]
 
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==Acetylcholine binding protein (AChBP) as template for hierarchical in silico screening procedures to identify structurally novel ligands for the nicotinic receptors==
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The line below this paragraph, containing "STRUCTURE_2xnv", creates the "Structure Box" on the page.
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<StructureSection load='2xnv' size='340' side='right'caption='[[2xnv]], [[Resolution|resolution]] 2.44&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2xnv]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Aplysia_californica Aplysia californica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XNV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XNV FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.44&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=VU3:2-(2-(4-PHENYLPIPERIDIN-1-YL)ETHYL)-1H-INDOLE'>VU3</scene></td></tr>
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{{STRUCTURE_2xnv| PDB=2xnv | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xnv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xnv OCA], [https://pdbe.org/2xnv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xnv RCSB], [https://www.ebi.ac.uk/pdbsum/2xnv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xnv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q8WSF8_APLCA Q8WSF8_APLCA]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Hierarchical in silico screening protocols against the agonist bound acetylcholine binding protein (AChBP) crystal structure were efficient in identifying novel chemotypes for AChBP and the human alpha7 receptor. Two hit structures were cocrystallized with AChBP revealing intermolecular cation-pi interactions with loop C but lacking intermolecular hydrogen bonding. The compounds act as competitive alpha7 receptor antagonists and as non-competitive alpha4beta2 receptor inhibitors. These results underline the usability of AChBP in structure-based in silico screening strategies in finding novel scaffolds for the alpha7 receptor, but also illustrates some limitations of using AChBP as bait to find competitive alpha4beta2 receptor ligands and alpha7 receptor agonists.
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===ACETYLCHOLINE BINDING PROTEIN (ACHBP) AS TEMPLATE FOR HIERARCHICAL IN SILICO SCREENING PROCEDURES TO IDENTIFY STRUCTURALLY NOVEL LIGANDS FOR THE NICOTINIC RECEPTORS===
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Acetylcholine binding protein (AChBP) as template for hierarchical in silico screening procedures to identify structurally novel ligands for the nicotinic receptors.,Akdemir A, Rucktooa P, Jongejan A, Elk R, Bertrand S, Sixma TK, Bertrand D, Smit AB, Leurs R, de Graaf C, de Esch IJ Bioorg Med Chem. 2011 Oct 15;19(20):6107-19. Epub 2011 Aug 27. PMID:21920761<ref>PMID:21920761</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2xnv" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_21920761}}, adds the Publication Abstract to the page
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*[[Acetylcholine binding protein 3D structures|Acetylcholine binding protein 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 21920761 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_21920761}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[2xnv]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Aplysia_californica Aplysia californica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XNV OCA].
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==Reference==
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<ref group="xtra">PMID:021920761</ref><references group="xtra"/>
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[[Category: Aplysia californica]]
[[Category: Aplysia californica]]
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[[Category: Akdemir, A.]]
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[[Category: Large Structures]]
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[[Category: Deesch, I.]]
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[[Category: Akdemir A]]
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[[Category: Rucktooa, P.]]
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[[Category: Rucktooa P]]
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[[Category: Sixma, T K.]]
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[[Category: Sixma TK]]
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[[Category: Choline-binding protein]]
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[[Category: DeEsch I]]
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[[Category: Cys-loop receptor]]
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[[Category: Electrophysiology]]
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[[Category: In-silico screening]]
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[[Category: Ligand-gated ion channel]]
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[[Category: Receptor]]
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Current revision

Acetylcholine binding protein (AChBP) as template for hierarchical in silico screening procedures to identify structurally novel ligands for the nicotinic receptors

PDB ID 2xnv

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