This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3szq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:58, 1 March 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3szq.png|left|200px]]
 
-
<!--
+
==Structure of an S. pombe APTX/DNA/AMP/Zn complex==
-
The line below this paragraph, containing "STRUCTURE_3szq", creates the "Structure Box" on the page.
+
<StructureSection load='3szq' size='340' side='right'caption='[[3szq]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3szq]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Schizosaccharomyces_pombe_972h- Schizosaccharomyces pombe 972h-]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SZQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SZQ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.353&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_3szq| PDB=3szq | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3szq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3szq OCA], [https://pdbe.org/3szq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3szq RCSB], [https://www.ebi.ac.uk/pdbsum/3szq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3szq ProSAT]</span></td></tr>
-
 
+
</table>
-
===Structure of an S. pombe APTX/DNA/AMP/Zn complex===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/APTX_SCHPO APTX_SCHPO] DNA-binding protein involved in single-strand DNA break repair, double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites, or when DNA ligases attempt to repair non-ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5'-phosphate termini, resulting in the production of 5'-phosphate termini that can be efficiently rejoined (By similarity).
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
[[3szq]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SZQ OCA].
+
[[Category: Large Structures]]
-
[[Category: Schizosaccharomyces pombe]]
+
[[Category: Schizosaccharomyces pombe 972h-]]
-
[[Category: Krahn, J.]]
+
[[Category: Krahn J]]
-
[[Category: Tumbale, P.]]
+
[[Category: Tumbale P]]
-
[[Category: Williams, R S.]]
+
[[Category: Williams RS]]
-
[[Category: C2he zinc finger]]
+
-
[[Category: Dna repair]]
+
-
[[Category: Hydrolase-dna complex]]
+

Current revision

Structure of an S. pombe APTX/DNA/AMP/Zn complex

PDB ID 3szq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3szq"
Personal tools