3b04

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:03, 13 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3b04.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with oIPP.==
-
The line below this paragraph, containing "STRUCTURE_3b04", creates the "Structure Box" on the page.
+
<StructureSection load='3b04' size='340' side='right'caption='[[3b04]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3b04]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_shibatae Saccharolobus shibatae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B04 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B04 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OOP:1-DEOXY-1-[(4AR)-4A-[(2R)-1-HYDROXY-5-{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLIDENEPENTAN-2-YL]-7,8-DIMETHYL-2,4-DIOXO-3,4,4A,5-TETRAHYDROBENZO[G]PTERIDIN-10(2H)-YL]-5-O-PHOSPHONO-D-RIBITOL'>OOP</scene></td></tr>
-
{{STRUCTURE_3b04| PDB=3b04 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b04 OCA], [https://pdbe.org/3b04 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b04 RCSB], [https://www.ebi.ac.uk/pdbsum/3b04 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b04 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/IDI2_SACSH IDI2_SACSH] Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).[HAMAP-Rule:MF_00354]<ref>PMID:19158086</ref> <ref>PMID:22158896</ref> <ref>PMID:22505674</ref>
-
===Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with oIPP.===
+
==See Also==
-
 
+
*[[Isopentenyl-diphosphate delta-isomerase|Isopentenyl-diphosphate delta-isomerase]]
-
 
+
*[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]]
-
<!--
+
== References ==
-
The line below this paragraph, {{ABSTRACT_PUBMED_018408159}}, adds the Publication Abstract to the page
+
<references/>
-
(as it appears on PubMed at http://www.pubmed.gov), where 018408159 is the PubMed ID number.
+
__TOC__
-
-->
+
</StructureSection>
-
{{ABSTRACT_PUBMED_018408159}}
+
[[Category: Large Structures]]
-
 
+
[[Category: Saccharolobus shibatae]]
-
==About this Structure==
+
[[Category: Hemmi H]]
-
[[3b04]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_shibatae Sulfolobus shibatae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B04 OCA].
+
[[Category: Nagai T]]
-
 
+
[[Category: Unno H]]
-
==Reference==
+
-
<ref group="xtra">PMID:018408159</ref><references group="xtra"/>
+
-
[[Category: Isopentenyl-diphosphate Delta-isomerase]]
+
-
[[Category: Sulfolobus shibatae]]
+
-
[[Category: Hemmi, H.]]
+
-
[[Category: Nagai, T.]]
+
-
[[Category: Unno, H.]]
+
-
[[Category: Fmn]]
+
-
[[Category: Idi]]
+
-
[[Category: Isomerase]]
+
-
[[Category: Isopentenyl diphosphate isomerase]]
+
-
[[Category: Oipp]]
+
-
[[Category: Type 2]]
+

Current revision

Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with oIPP.

PDB ID 3b04

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools