3pab

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[[Image:3pab.png|left|200px]]
 
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==Crystal Structure of H2-Kb in complex with a mutant of the chicken ovalbumin epitope OVA-E1==
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The line below this paragraph, containing "STRUCTURE_3pab", creates the "Structure Box" on the page.
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<StructureSection load='3pab' size='340' side='right'caption='[[3pab]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3pab]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PAB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PAB FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pab FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pab OCA], [https://pdbe.org/3pab PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pab RCSB], [https://www.ebi.ac.uk/pdbsum/3pab PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pab ProSAT]</span></td></tr>
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{{STRUCTURE_3pab| PDB=3pab | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/B2MG_MOUSE B2MG_MOUSE] Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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High-avidity interactions between TCRs and peptide + class I MHC (pMHCI) epitopes drive CTL activation and expansion. Intriguing questions remain concerning the constraints determining optimal TCR/pMHCI binding. The present analysis uses the TCR transgenic OT-I model to assess how varying profiles of TCR/pMHCI avidity influence naive CTL proliferation and the acquisition of effector function following exposure to the cognate H-2K(b)/OVA(257-264) (SIINFEKL) epitope and to mutants provided as peptide or in engineered influenza A viruses. Stimulating naive OT-I CD8(+) T cells in vitro with SIINFEKL induced full CTL proliferation and differentiation that was largely independent of any need for costimulation. By contrast, in vitro activation with the low-affinity EIINFEKL or SIIGFEKL ligands depended on the provision of IL-2 and other costimulatory signals. Importantly, although they did generate potent endogenous responses, infection of mice with influenza A viruses expressing these same OVA(257) variants failed to induce the activation of adoptively transferred naive OT-I CTLps, an effect that was only partially overcome by priming with a lipopeptide vaccine. Subsequent structural and biophysical analysis of H2-K(b)OVA(257), H2-K(b)E1, and H2-K(b)G4 established that these variations introduce small changes at the pMHCI interface and decrease epitope stability in ways that would likely impact cell surface presentation and recognition. Overall, it seems that there is an activation threshold for naive CTLps, that minimal alterations in peptide sequence can have profound effects, and that the antigenic requirements for the in vitro and in vivo induction of CTL proliferation and effector function differ substantially.
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===Crystal Structure of H2-Kb in complex with a mutant of the chicken ovalbumin epitope OVA-E1===
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Affinity Thresholds for Naive CD8+ CTL Activation by Peptides and Engineered Influenza A Viruses.,Denton AE, Wesselingh R, Gras S, Guillonneau C, Olson MR, Mintern JD, Zeng W, Jackson DC, Rossjohn J, Hodgkin PD, Doherty PC, Turner SJ J Immunol. 2011 Oct 28. PMID:22039305<ref>PMID:22039305</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3pab" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_22039305}}, adds the Publication Abstract to the page
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*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 22039305 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_22039305}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Gallus gallus]]
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[[3pab]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PAB OCA].
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[[Category: Large Structures]]
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==Reference==
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<ref group="xtra">PMID:022039305</ref><references group="xtra"/>
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[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Gras, S.]]
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[[Category: Gras S]]
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[[Category: Guillonneau, C.]]
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[[Category: Guillonneau C]]
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[[Category: Rossjohn, J.]]
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[[Category: Rossjohn J]]
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[[Category: Turner, S J.]]
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[[Category: Turner SJ]]
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[[Category: Wesselingh, R.]]
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[[Category: Wesselingh R]]
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[[Category: Altered peptide ligand]]
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[[Category: Apl]]
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[[Category: H2kb]]
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[[Category: Immune system]]
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[[Category: Ova]]
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[[Category: Ovalbumin]]
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[[Category: T cell]]
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[[Category: Tcr]]
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Current revision

Crystal Structure of H2-Kb in complex with a mutant of the chicken ovalbumin epitope OVA-E1

PDB ID 3pab

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