2dch

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:47, 13 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2dch.png|left|200px]]
 
-
<!--
+
==Crystal structure of archaeal intron-encoded homing endonuclease I-Tsp061I==
-
The line below this paragraph, containing "STRUCTURE_2dch", creates the "Structure Box" on the page.
+
<StructureSection load='2dch' size='340' side='right'caption='[[2dch]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2dch]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoproteus Thermoproteus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DCH FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.06&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2dch| PDB=2dch | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dch FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dch OCA], [https://pdbe.org/2dch PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dch RCSB], [https://www.ebi.ac.uk/pdbsum/2dch PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dch ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8J309_9CREN Q8J309_9CREN]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/2dch_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dch ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of archaeal intron-encoded homing endonuclease I-Tsp061I===
+
==See Also==
-
 
+
*[[Endonuclease 3D structures|Endonuclease 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_17069851}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 17069851 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_17069851}}
+
-
 
+
-
==About this Structure==
+
-
[[2dch]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoproteus Thermoproteus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCH OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:017069851</ref><references group="xtra"/>
+
[[Category: Thermoproteus]]
[[Category: Thermoproteus]]
-
[[Category: Miyano, M.]]
+
[[Category: Miyano M]]
-
[[Category: Nakayama, H.]]
+
[[Category: Nakayama H]]
-
[[Category: Nomura, N.]]
+
[[Category: Nomura N]]
-
[[Category: Sako, Y.]]
+
[[Category: Sako Y]]
-
[[Category: Shimamura, T.]]
+
[[Category: Shimamura T]]
-
[[Category: Tsuge, H.]]
+
[[Category: Tsuge H]]
-
[[Category: Alpha/beta fold]]
+
-
[[Category: Hydrolase]]
+

Current revision

Crystal structure of archaeal intron-encoded homing endonuclease I-Tsp061I

PDB ID 2dch

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2dch"
Personal tools