This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1q7h

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:01, 17 April 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1q7h.png|left|200px]]
 
-
<!--
+
==Structure of a Conserved PUA Domain Protein from Thermoplasma acidophilum==
-
The line below this paragraph, containing "STRUCTURE_1q7h", creates the "Structure Box" on the page.
+
<StructureSection load='1q7h' size='340' side='right'caption='[[1q7h]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1q7h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_acidophilum_DSM_1728 Thermoplasma acidophilum DSM 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q7H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q7H FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_1q7h| PDB=1q7h | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q7h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q7h OCA], [https://pdbe.org/1q7h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q7h RCSB], [https://www.ebi.ac.uk/pdbsum/1q7h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q7h ProSAT], [https://www.topsan.org/Proteins/MCSG/1q7h TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Structure of a Conserved PUA Domain Protein from Thermoplasma acidophilum===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9HIB8_THEAC Q9HIB8_THEAC]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[1q7h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum_dsm_1728 Thermoplasma acidophilum dsm 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q7H OCA].
+
Check<jmol>
-
[[Category: Thermoplasma acidophilum dsm 1728]]
+
<jmolCheckbox>
-
[[Category: Cuff, M E.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q7/1q7h_consurf.spt"</scriptWhenChecked>
-
[[Category: Edwards, A.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Joachimiak, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Savchenko, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q7h ConSurf].
-
[[Category: Xu, X.]]
+
<div style="clear:both"></div>
-
[[Category: Mcsg]]
+
__TOC__
-
[[Category: Midwest center for structural genomic]]
+
</StructureSection>
-
[[Category: Protein structure initiative]]
+
[[Category: Large Structures]]
-
[[Category: Psi]]
+
[[Category: Thermoplasma acidophilum DSM 1728]]
-
[[Category: Structural genomic]]
+
[[Category: Cuff ME]]
-
[[Category: Thermoplasma acidophilum]]
+
[[Category: Edwards A]]
-
[[Category: Unknown function]]
+
[[Category: Joachimiak A]]
 +
[[Category: Savchenko A]]
 +
[[Category: Xu X]]

Current revision

Structure of a Conserved PUA Domain Protein from Thermoplasma acidophilum

PDB ID 1q7h

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools