3syk

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[[Image:3syk.png|left|200px]]
 
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==Crystal structure of the AAA+ protein CbbX, selenomethionine structure==
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The line below this paragraph, containing "STRUCTURE_3syk", creates the "Structure Box" on the page.
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<StructureSection load='3syk' size='340' side='right'caption='[[3syk]], [[Resolution|resolution]] 3.08&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3syk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SYK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SYK FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.08&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_3syk| PDB=3syk | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3syk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3syk OCA], [https://pdbe.org/3syk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3syk RCSB], [https://www.ebi.ac.uk/pdbsum/3syk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3syk ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CBBX_CERSP CBBX_CERSP] ATPase involved in the activation of red-type RuBisCo (ribulose-1,5-bisphosphate carboxylase/oxygenase), which tends to form inactive complexes with its substrate ribulose 1,5-bisphosphate (RuBP) (PubMed:22048315, PubMed:27872295). Catalyzes the release of RuBP from inhibited RuBisCo in an ATP-dependent manner (PubMed:22048315, PubMed:27872295). Activation of RuBisCO involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure (PubMed:22048315, PubMed:27872295).<ref>PMID:22048315</ref> <ref>PMID:27872295</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco) catalyses the fixation of atmospheric CO(2) in photosynthesis, but tends to form inactive complexes with its substrate ribulose 1,5-bisphosphate (RuBP). In plants, Rubisco is reactivated by the AAA(+) (ATPases associated with various cellular activities) protein Rubisco activase (Rca), but no such protein is known for the Rubisco of red algae. Here we identify the protein CbbX as an activase of red-type Rubisco. The 3.0-A crystal structure of unassembled CbbX from Rhodobacter sphaeroides revealed an AAA(+) protein architecture. Electron microscopy and biochemical analysis showed that ATP and RuBP must bind to convert CbbX into functionally active, hexameric rings. The CbbX ATPase is strongly stimulated by RuBP and Rubisco. Mutational analysis suggests that CbbX functions by transiently pulling the carboxy-terminal peptide of the Rubisco large subunit into the hexamer pore, resulting in the release of the inhibitory RuBP. Understanding Rubisco activation may facilitate efforts to improve CO(2) uptake and biomass production by photosynthetic organisms.
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===Crystal structure of the AAA+ protein CbbX, selenomethionine structure===
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Structure and function of the AAA+ protein CbbX, a red-type Rubisco activase.,Mueller-Cajar O, Stotz M, Wendler P, Hartl FU, Bracher A, Hayer-Hartl M Nature. 2011 Nov 2;479(7372):194-9. doi: 10.1038/nature10568. PMID:22048315<ref>PMID:22048315</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3syk" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 22048315 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_22048315}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Cereibacter sphaeroides]]
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[[3syk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SYK OCA].
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[[Category: Large Structures]]
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[[Category: Bracher A]]
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==Reference==
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[[Category: Hartl FU]]
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<ref group="xtra">PMID:022048315</ref><references group="xtra"/>
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[[Category: Hayer-Hartl M]]
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[[Category: Rhodobacter sphaeroides]]
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[[Category: Mueller-Cajar O]]
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[[Category: Bracher, A.]]
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[[Category: Stotz M]]
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[[Category: Hartl, F U.]]
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[[Category: Wendler P]]
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[[Category: Hayer-Hartl, M.]]
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[[Category: Mueller-Cajar, O.]]
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[[Category: Stotz, M.]]
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[[Category: Wendler, P.]]
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[[Category: Aaa+ protein]]
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[[Category: Calvin cycle]]
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[[Category: Chaperone]]
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[[Category: Photosynthesis]]
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[[Category: Rubisco activase]]
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Current revision

Crystal structure of the AAA+ protein CbbX, selenomethionine structure

PDB ID 3syk

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