2bis

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[[Image:2bis.gif|left|200px]]<br /><applet load="2bis" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2bis, resolution 2.80&Aring;" />
 
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'''STRUCTURE OF GLYCOGEN SYNTHASE FROM PYROCOCCUS ABYSSI'''<br />
 
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==Overview==
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==Structure of glycogen synthase from Pyrococcus abyssi==
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Glycogen and starch synthases are retaining glycosyltransferases that, catalyze the transfer of glucosyl residues to the non-reducing end of a, growing alpha-1,4-glucan chain, a central process of the carbon/energy, metabolism present in almost all living organisms. The crystal structure, of the glycogen synthase from Pyrococcus abyssi, the smallest known member, of this family of enzymes, revealed that its subunits possess a fold, common to other glycosyltransferases, a pair of beta/alpha/beta Rossmann, fold-type domains with the catalytic site at their interface., Nevertheless, the archaeal enzyme presents an unprecedented homotrimeric, molecular arrangement both in solution, as determined by analytical, ultracentrifugation, and in the crystal. The C-domains are not involved in, intersubunit interactions of the trimeric molecule, thus allowing for, movements, likely required for catalysis, across the narrow hinge that, connects the N- and C-domains. The radial disposition of the subunits, confers on the molecule a distinct triangular shape, clearly visible with, negative staining electron microscopy, in which the upper and lower faces, present a sharp asymmetry. Comparison of bacterial and eukaryotic glycogen, synthases, which use, respectively, ADP or UDP glucose as donor, substrates, with the archaeal enzyme, which can utilize both molecules, allowed us to propose the residues that determine glucosyl donor, specificity.
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<StructureSection load='2bis' size='340' side='right'caption='[[2bis]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2bis]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BIS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BIS FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DIO:1,4-DIETHYLENE+DIOXIDE'>DIO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bis OCA], [https://pdbe.org/2bis PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bis RCSB], [https://www.ebi.ac.uk/pdbsum/2bis PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bis ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9V2J8_PYRAB Q9V2J8_PYRAB]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bi/2bis_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bis ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Glycogen and starch synthases are retaining glycosyltransferases that catalyze the transfer of glucosyl residues to the non-reducing end of a growing alpha-1,4-glucan chain, a central process of the carbon/energy metabolism present in almost all living organisms. The crystal structure of the glycogen synthase from Pyrococcus abyssi, the smallest known member of this family of enzymes, revealed that its subunits possess a fold common to other glycosyltransferases, a pair of beta/alpha/beta Rossmann fold-type domains with the catalytic site at their interface. Nevertheless, the archaeal enzyme presents an unprecedented homotrimeric molecular arrangement both in solution, as determined by analytical ultracentrifugation, and in the crystal. The C-domains are not involved in intersubunit interactions of the trimeric molecule, thus allowing for movements, likely required for catalysis, across the narrow hinge that connects the N- and C-domains. The radial disposition of the subunits confers on the molecule a distinct triangular shape, clearly visible with negative staining electron microscopy, in which the upper and lower faces present a sharp asymmetry. Comparison of bacterial and eukaryotic glycogen synthases, which use, respectively, ADP or UDP glucose as donor substrates, with the archaeal enzyme, which can utilize both molecules, allowed us to propose the residues that determine glucosyl donor specificity.
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==About this Structure==
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Crystal structure of an archaeal glycogen synthase: insights into oligomerization and substrate binding of eukaryotic glycogen synthases.,Horcajada C, Guinovart JJ, Fita I, Ferrer JC J Biol Chem. 2006 Feb 3;281(5):2923-31. Epub 2005 Nov 29. PMID:16319074<ref>PMID:16319074</ref>
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2BIS is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi] with <scene name='pdbligand=GLC:'>GLC</scene>, <scene name='pdbligand=DIO:'>DIO</scene>, <scene name='pdbligand=UDP:'>UDP</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Starch_synthase Starch synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.21 2.4.1.21] Known structural/functional Site: <scene name='pdbsite=AC1:Glc+Binding+Site+For+Chain+C'>AC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BIS OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of an archaeal glycogen synthase: insights into oligomerization and substrate binding of eukaryotic glycogen synthases., Horcajada C, Guinovart JJ, Fita I, Ferrer JC, J Biol Chem. 2006 Feb 3;281(5):2923-31. Epub 2005 Nov 29. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16319074 16319074]
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</div>
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<div class="pdbe-citations 2bis" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Pyrococcus abyssi]]
[[Category: Pyrococcus abyssi]]
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[[Category: Single protein]]
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[[Category: Ferrer JC]]
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[[Category: Starch synthase]]
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[[Category: Fita I]]
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[[Category: Ferrer, J.C.]]
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[[Category: Guinovart JJ]]
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[[Category: Fita, I.]]
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[[Category: Horcajada C]]
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[[Category: Guinovart, J.J.]]
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[[Category: Horcajada, C.]]
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[[Category: DIO]]
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[[Category: GLC]]
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[[Category: GOL]]
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[[Category: UDP]]
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[[Category: 5 udp/adp-glucose-glycogen synthase]]
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[[Category: glycosyltransferase family]]
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[[Category: transferase]]
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[[Category: two rossman folds]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 10:24:38 2008''
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Current revision

Structure of glycogen synthase from Pyrococcus abyssi

PDB ID 2bis

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