2bnm

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[[Image:2bnm.gif|left|200px]]<br /><applet load="2bnm" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2bnm, resolution 1.70&Aring;" />
 
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'''STRUCTURE OF A ZN ENZYME'''<br />
 
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==Overview==
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==The structure of Hydroxypropylphosphonic acid epoxidase from S. wedmorenis.==
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The biosynthesis of fosfomycin, an oxirane antibiotic in clinical use, involves a unique epoxidation catalyzed by (S)-2-hydroxypropylphosphonic, acid epoxidase (HPPE). The reaction is essentially dehydrogenation of a, secondary alcohol. A high-resolution crystallographic analysis reveals, that the HPPE subunit displays a two-domain combination. The C-terminal or, catalytic domain has the cupin fold that binds a divalent cation, whereas, the N-terminal domain carries a helix-turn-helix motif with putative, DNA-binding helices positioned 34 A apart. The structure of HPPE serves as, a model for numerous proteins, of ill-defined function, predicted to be, transcription factors but carrying a cupin domain at the C terminus., Structure-reactivity analyses reveal conformational changes near the, catalytic center driven by the presence or absence of ligand, that HPPE is, a Zn(2+)/Fe(2+)-dependent epoxidase, proof that flavin mononucleotide is, required for catalysis, and allow us to propose a simple mechanism that is, compatible with previous experimental data. The participation of the redox, inert Zn(2+) in the mechanism is surprising and indicates that Lewis acid, properties of the metal ions are sufficient to polarize the substrate and, aided by flavin mononucleotide reduction, facilitate the epoxidation.
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<StructureSection load='2bnm' size='340' side='right'caption='[[2bnm]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2bnm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_wedmorensis Streptomyces wedmorensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BNM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BNM FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bnm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bnm OCA], [https://pdbe.org/2bnm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bnm RCSB], [https://www.ebi.ac.uk/pdbsum/2bnm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bnm ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/HPPE_STRWE HPPE_STRWE] Non-heme-dependent dioxygenase that catalyzes the oxidative epoxidation of (S)-2-hydroxypropylphosphonate into (1R,2S)-epoxypropylphosphonate, the final step in the biosynthesis of fosfomycin antibiotic.<ref>PMID:16015285</ref> <ref>PMID:16186494</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bn/2bnm_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bnm ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The biosynthesis of fosfomycin, an oxirane antibiotic in clinical use, involves a unique epoxidation catalyzed by (S)-2-hydroxypropylphosphonic acid epoxidase (HPPE). The reaction is essentially dehydrogenation of a secondary alcohol. A high-resolution crystallographic analysis reveals that the HPPE subunit displays a two-domain combination. The C-terminal or catalytic domain has the cupin fold that binds a divalent cation, whereas the N-terminal domain carries a helix-turn-helix motif with putative DNA-binding helices positioned 34 A apart. The structure of HPPE serves as a model for numerous proteins, of ill-defined function, predicted to be transcription factors but carrying a cupin domain at the C terminus. Structure-reactivity analyses reveal conformational changes near the catalytic center driven by the presence or absence of ligand, that HPPE is a Zn(2+)/Fe(2+)-dependent epoxidase, proof that flavin mononucleotide is required for catalysis, and allow us to propose a simple mechanism that is compatible with previous experimental data. The participation of the redox inert Zn(2+) in the mechanism is surprising and indicates that Lewis acid properties of the metal ions are sufficient to polarize the substrate and, aided by flavin mononucleotide reduction, facilitate the epoxidation.
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==About this Structure==
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Structure and reactivity of hydroxypropylphosphonic acid epoxidase in fosfomycin biosynthesis by a cation- and flavin-dependent mechanism.,McLuskey K, Cameron S, Hammerschmidt F, Hunter WN Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14221-6. Epub 2005 Sep 26. PMID:16186494<ref>PMID:16186494</ref>
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2BNM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_wedmorensis Streptomyces wedmorensis] with <scene name='pdbligand=ZN:'>ZN</scene> and <scene name='pdbligand=SO4:'>SO4</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Site: <scene name='pdbsite=AC1:So4+Binding+Site+For+Chain+B'>AC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BNM OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structure and reactivity of hydroxypropylphosphonic acid epoxidase in fosfomycin biosynthesis by a cation- and flavin-dependent mechanism., McLuskey K, Cameron S, Hammerschmidt F, Hunter WN, Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14221-6. Epub 2005 Sep 26. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16186494 16186494]
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</div>
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[[Category: Single protein]]
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<div class="pdbe-citations 2bnm" style="background-color:#fffaf0;"></div>
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[[Category: Streptomyces wedmorensis]]
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[[Category: Cameron, S.]]
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[[Category: Hunter, W.N.]]
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[[Category: Mcluskey, K.]]
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[[Category: SO4]]
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[[Category: ZN]]
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[[Category: cation-dependant]]
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[[Category: cupin]]
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[[Category: epoxidase]]
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[[Category: fosfomycin]]
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[[Category: hth]]
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[[Category: oxidoreductase]]
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[[Category: zinc]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 10:26:07 2008''
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==See Also==
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*[[Epoxidase 3D structures|Epoxidase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Streptomyces wedmorensis]]
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[[Category: Cameron S]]
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[[Category: Hunter WN]]
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[[Category: McLuskey K]]

Current revision

The structure of Hydroxypropylphosphonic acid epoxidase from S. wedmorenis.

PDB ID 2bnm

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