2wm4

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[[Image:2wm4.png|left|200px]]
 
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==X-ray structure of Mycobacterium tuberculosis cytochrome P450 CYP124 in complex with phytanic acid==
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The line below this paragraph, containing "STRUCTURE_2wm4", creates the "Structure Box" on the page.
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<StructureSection load='2wm4' size='340' side='right'caption='[[2wm4]], [[Resolution|resolution]] 2.11&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2wm4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WM4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WM4 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.11&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=VGJ:(3R,7S,11S)-3,7,11,15-TETRAMETHYLHEXADECANOIC+ACID'>VGJ</scene></td></tr>
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{{STRUCTURE_2wm4| PDB=2wm4 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wm4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wm4 OCA], [https://pdbe.org/2wm4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wm4 RCSB], [https://www.ebi.ac.uk/pdbsum/2wm4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wm4 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CP124_MYCTU CP124_MYCTU]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wm/2wm4_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wm4 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Mycobacterium tuberculosis (Mtb) produces a variety of methyl-branched lipids that serve important functions, including modulating the immune response during pathogenesis and contributing to a robust cell wall that is impermeable to many chemical agents. Here, we report characterization of Mtb CYP124 (Rv2266) that includes demonstration of preferential oxidation of methyl-branched lipids. Spectrophotometric titrations and analysis of reaction products indicate that CYP124 tightly binds and hydroxylates these substrates at the chemically disfavored omega-position. We also report X-ray crystal structures of the ligand-free and phytanic acid-bound protein at a resolution of 1.5 A and 2.1 A, respectively, which provide structural insights into a cytochrome P450 with predominant omega-hydroxylase activity. The structures of ligand-free and substrate-bound CYP124 reveal several differences induced by substrate binding, including reorganization of the I helix and closure of the active site by elements of the F, G, and D helices that bind the substrate and exclude solvent from the hydrophobic active site cavity. The observed regiospecific catalytic activity suggests roles of CYP124 in the physiological oxidation of relevant Mtb methyl-branched lipids. The enzymatic specificity and structures reported here provide a scaffold for the design and testing of specific inhibitors of CYP124.
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===X-RAY STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS CYTOCHROME P450 CYP124 IN COMPLEX WITH PHYTANIC ACID===
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Biochemical and structural characterization of CYP124: A methyl-branched lipid {omega}-hydroxylase from Mycobacterium tuberculosis.,Johnston JB, Kells PM, Podust LM, Ortiz de Montellano PR Proc Natl Acad Sci U S A. 2009 Nov 20. PMID:19933331<ref>PMID:19933331</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_19933331}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2wm4" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 19933331 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19933331}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[2wm4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WM4 OCA].
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[[Category: Mycobacterium tuberculosis H37Rv]]
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[[Category: Johnston JB]]
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==Reference==
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[[Category: Kells PM]]
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<ref group="xtra">PMID:019933331</ref><references group="xtra"/>
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[[Category: Ortiz de Montellano PR]]
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[[Category: Mycobacterium tuberculosis]]
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[[Category: Podust LM]]
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[[Category: Johnston, J B.]]
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[[Category: Kells, P M.]]
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[[Category: Montellano, P R.Ortiz De.]]
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[[Category: Podust, L M.]]
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[[Category: Fatty acid]]
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[[Category: Heme]]
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[[Category: Iron]]
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[[Category: Metal-binding]]
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[[Category: Monooxygenase]]
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[[Category: Omega-hydroxylation]]
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[[Category: Oxidoreductase]]
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[[Category: P450]]
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Current revision

X-ray structure of Mycobacterium tuberculosis cytochrome P450 CYP124 in complex with phytanic acid

PDB ID 2wm4

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