3zq5

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[[Image:3zq5.png|left|200px]]
 
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==Structure of the Y263F mutant of the cyanobacterial phytochrome Cph1==
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The line below this paragraph, containing "STRUCTURE_3zq5", creates the "Structure Box" on the page.
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<StructureSection load='3zq5' size='340' side='right'caption='[[3zq5]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3zq5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZQ5 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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{{STRUCTURE_3zq5| PDB=3zq5 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zq5 OCA], [https://pdbe.org/3zq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zq5 RCSB], [https://www.ebi.ac.uk/pdbsum/3zq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zq5 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PHY1_SYNY3 PHY1_SYNY3] Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift for the far-red maximum. Forms a two-component system with the rcp1 response regulator.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Phytochromes are biliprotein photoreceptors that can be photoswitched between red-light-absorbing state (Pr) and far-red-light-absorbing state (Pfr). Although three-dimensional structures of both states have been reported, the photoconversion and intramolecular signaling mechanisms are still unclear. Here, we report UV-Vis absorbance, fluorescence and CD spectroscopy along with various photochemical parameters of the wild type and Y263F, Y263H and Y263S mutants of the Cph1 photosensory module, as well as a 2.0-A-resolution crystal structure of the Y263F mutant in its Pr ground state. Although Y263 is conserved, we show that the aromatic character but not the hydroxyl group of Y263 is important for Pfr formation. The crystal structure of the Y263F mutant (Protein Data Bank ID: 3ZQ5) reaffirms the ZZZssa chromophore configuration and provides a detailed picture of its binding pocket, particularly conformational heterogeneity around the chromophore. Comparison with other phytochrome structures reveals differences in the relative position of the PHY (phytochrome specific) domain and the interaction of the tongue with the extreme N-terminus. Our data support the notion that native phytochromes in their Pr state are structurally heterogeneous.
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===STRUCTURE OF THE Y263F MUTANT OF THE CYANOBACTERIAL PHYTOCHROME CPH1===
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Spectroscopy and a high-resolution crystal structure of Tyr263 mutants of cyanobacterial phytochrome Cph1.,Mailliet J, Psakis G, Feilke K, Sineshchekov V, Essen LO, Hughes J J Mol Biol. 2011 Oct 14;413(1):115-27. Epub 2011 Aug 23. PMID:21888915<ref>PMID:21888915</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_21888915}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3zq5" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 21888915 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_21888915}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[3zq5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp._pcc_6803 Synechocystis sp. pcc 6803]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZQ5 OCA].
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[[Category: Synechocystis sp. PCC 6803]]
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[[Category: Essen L-O]]
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==Reference==
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[[Category: Hughes J]]
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<ref group="xtra">PMID:021888915</ref><references group="xtra"/>
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[[Category: Mailliet J]]
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[[Category: Histidine kinase]]
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[[Category: Psakis G]]
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[[Category: Synechocystis sp. pcc 6803]]
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[[Category: Sineshchekov V]]
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[[Category: Essen, L O.]]
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[[Category: Hughes, J.]]
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[[Category: Mailliet, J.]]
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[[Category: Psakis, G.]]
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[[Category: Sineshchekov, V.]]
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[[Category: Arginine finger]]
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[[Category: Bilin-like chromophore]]
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[[Category: Chromophore]]
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[[Category: Pas domain]]
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[[Category: Photoreceptor]]
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[[Category: Photoreceptor protein]]
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[[Category: Phytochrome]]
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[[Category: Receptor]]
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[[Category: Sensory transduction]]
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[[Category: Tandem gaf domain]]
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[[Category: Transferase]]
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Current revision

Structure of the Y263F mutant of the cyanobacterial phytochrome Cph1

PDB ID 3zq5

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