This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3lg3
From Proteopedia
(Difference between revisions)
m (Protected "3lg3" [edit=sysop:move=sysop]) |
|||
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3lg3.png|left|200px]] | ||
| - | + | ==1.4A Crystal Structure of Isocitrate Lyase from Yersinia pestis CO92== | |
| - | + | <StructureSection load='3lg3' size='340' side='right' caption='[[3lg3]], [[Resolution|resolution]] 1.40Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3lg3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pestis"_(lehmann_and_neumann_1896)_migula_1900 "bacillus pestis" (lehmann and neumann 1896) migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LG3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LG3 FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aceA, y0016, YPO3725, YP_3087 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 "Bacillus pestis" (Lehmann and Neumann 1896) Migula 1900])</td></tr> | |
| - | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Isocitrate_lyase Isocitrate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.3.1 4.1.3.1] </span></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lg3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lg3 OCA], [http://pdbe.org/3lg3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lg3 RCSB], [http://www.ebi.ac.uk/pdbsum/3lg3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lg3 ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | == | + | Check<jmol> |
| - | [[3lg3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <jmolCheckbox> |
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lg/3lg3_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lg3 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Isocitrate lyase]] | [[Category: Isocitrate lyase]] | ||
| - | + | [[Category: Anderson, W F]] | |
| - | [[Category: Anderson, W F | + | [[Category: Brunzelle, J S]] |
| - | [[Category: Brunzelle, J S | + | [[Category: Structural genomic]] |
| - | [[Category: | + | [[Category: Savchenko, A]] |
| - | [[Category: Savchenko, A | + | [[Category: Sharma, S S]] |
| - | [[Category: Sharma, S S | + | [[Category: Skarina, T]] |
| - | [[Category: Skarina, T | + | |
[[Category: Cd]] | [[Category: Cd]] | ||
| - | [[Category: Center for structural genomics of infectious disease]] | ||
[[Category: Conserved]] | [[Category: Conserved]] | ||
[[Category: Csgid]] | [[Category: Csgid]] | ||
[[Category: Drug target function]] | [[Category: Drug target function]] | ||
| - | [[Category: Isocitrate lyase]] | ||
[[Category: Lyase]] | [[Category: Lyase]] | ||
| - | [[Category: Structural genomic]] | ||
Current revision
1.4A Crystal Structure of Isocitrate Lyase from Yersinia pestis CO92
| |||||||||||

