3kom

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3kom" [edit=sysop:move=sysop])
Current revision (12:27, 13 October 2021) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3kom.png|left|200px]]
 
-
<!--
+
==Crystal structure of apo transketolase from Francisella tularensis==
-
The line below this paragraph, containing "STRUCTURE_3kom", creates the "Structure Box" on the page.
+
<StructureSection load='3kom' size='340' side='right'caption='[[3kom]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3kom]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Fratt Fratt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KOM FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tktA, FTT1369c, FTT_1369c ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=177416 FRATT])</td></tr>
-
{{STRUCTURE_3kom| PDB=3kom | SCENE= }}
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Transketolase Transketolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.2.1.1 2.2.1.1] </span></td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kom FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kom OCA], [https://pdbe.org/3kom PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kom RCSB], [https://www.ebi.ac.uk/pdbsum/3kom PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kom ProSAT]</span></td></tr>
-
===Crystal structure of apo transketolase from Francisella tularensis===
+
</table>
-
 
+
== Function ==
-
 
+
[[https://www.uniprot.org/uniprot/Q5NF74_FRATT Q5NF74_FRATT]] Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate (By similarity).[RuleBase:RU004996]
-
==About this Structure==
+
== Evolutionary Conservation ==
-
[[3kom]] is a 2 chain structure of [[Transketolase]] with sequence from [http://en.wikipedia.org/wiki/Francisella_tularensis_subsp._tularensis Francisella tularensis subsp. tularensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOM OCA].
+
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/3kom_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kom ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Transketolase]]
+
*[[Transketolase|Transketolase]]
-
[[Category: Francisella tularensis subsp. tularensis]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Fratt]]
 +
[[Category: Large Structures]]
[[Category: Transketolase]]
[[Category: Transketolase]]
-
[[Category: Anderson, S M.]]
+
[[Category: Anderson, S M]]
-
[[Category: Anderson, W F.]]
+
[[Category: Anderson, W F]]
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
[[Category: Structural genomic]]
-
[[Category: Gordon, E.]]
+
[[Category: Gordon, E]]
-
[[Category: Kwon, K.]]
+
[[Category: Kwon, K]]
-
[[Category: Savchenko, A.]]
+
[[Category: Savchenko, A]]
-
[[Category: Skarina, T.]]
+
[[Category: Skarina, T]]
-
[[Category: Wawrzak, Z.]]
+
[[Category: Wawrzak, Z]]
-
[[Category: Center for structural genomics of infectious disease]]
+
[[Category: Csgid]]
[[Category: Csgid]]
[[Category: Rossmann fold]]
[[Category: Rossmann fold]]
-
[[Category: Structural genomic]]
 
[[Category: Transferase]]
[[Category: Transferase]]
-
[[Category: Transketolase]]
 

Current revision

Crystal structure of apo transketolase from Francisella tularensis

PDB ID 3kom

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3kom"
Personal tools