1ohg

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[[Image:1ohg.png|left|200px]]
 
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==STRUCTURE OF THE DSDNA BACTERIOPHAGE HK97 MATURE EMPTY CAPSID==
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The line below this paragraph, containing "STRUCTURE_1ohg", creates the "Structure Box" on the page.
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<SX load='1ohg' size='340' side='right' viewer='molstar' caption='[[1ohg]], [[Resolution|resolution]] 3.45&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1ohg]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_HK97 Escherichia virus HK97]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1fh6 1fh6]. The September 2007 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Citrate Synthase'' by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2007_9 10.2210/rcsb_pdb/mom_2007_9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OHG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OHG FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.45&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_1ohg| PDB=1ohg | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ohg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ohg OCA], [https://pdbe.org/1ohg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ohg RCSB], [https://www.ebi.ac.uk/pdbsum/1ohg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ohg ProSAT]</span></td></tr>
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</table>
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===STRUCTURE OF THE DSDNA BACTERIOPHAGE HK97 MATURE EMPTY CAPSID===
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== Function ==
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[https://www.uniprot.org/uniprot/CAPSD_BPHK7 CAPSD_BPHK7] Assembles to form an icosahedral capsid of 66 nm, with a T=7 laevo symmetry (PubMed:11000116, PubMed:21276801). Responsible for its self-assembly into a procapsid. The phage does not need to encode a separate scaffolfing protein because its capsid protein contains the delta domain that carries that function.<ref>PMID:11000116</ref> <ref>PMID:21276801</ref> <ref>PMID:7669350</ref> <ref>PMID:7723020</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_14643655}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 14643655 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oh/1ohg_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_14643655}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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[[1ohg]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_hk97 Enterobacteria phage hk97]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1fh6 1fh6]. The September 2007 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Citrate Synthase'' by David S. Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2007_9 10.2210/rcsb_pdb/mom_2007_9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OHG OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ohg ConSurf].
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<div style="clear:both"></div>
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==Reference==
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== References ==
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<ref group="xtra">PMID:014643655</ref><ref group="xtra">PMID:010930835</ref><ref group="xtra">PMID:011000116</ref><ref group="xtra">PMID:010089306</ref><ref group="xtra">PMID:018940605</ref><references group="xtra"/>
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<references/>
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__TOC__
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</SX>
[[Category: Citrate Synthase]]
[[Category: Citrate Synthase]]
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[[Category: Enterobacteria phage hk97]]
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[[Category: Escherichia virus HK97]]
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[[Category: Large Structures]]
[[Category: RCSB PDB Molecule of the Month]]
[[Category: RCSB PDB Molecule of the Month]]
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[[Category: Duda, R L.]]
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[[Category: Duda RL]]
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[[Category: Helgstrand, C.]]
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[[Category: Helgstrand C]]
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[[Category: Hendrix, R W.]]
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[[Category: Hendrix RW]]
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[[Category: Johnson, J E.]]
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[[Category: Johnson JE]]
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[[Category: Liljas, L.]]
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[[Category: Liljas L]]
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[[Category: Wikoff, W R.]]
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[[Category: Wikoff WR]]
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[[Category: Auto- catalytic cross-link]]
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[[Category: Bacteriophage]]
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[[Category: Capsid]]
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[[Category: Icosahedral virus]]
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[[Category: Virus]]
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[[Category: Virus coat protein]]
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[[Category: Virus/viral protein]]
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Current revision

STRUCTURE OF THE DSDNA BACTERIOPHAGE HK97 MATURE EMPTY CAPSID

1ohg, resolution 3.45Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

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