2v3g

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:04, 13 December 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2v3g.jpg|left|200px]]<br /><applet load="2v3g" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2v3g, resolution 1.20&Aring;" />
 
-
'''STRUCTURE OF A FAMILY 26 LICHENASE IN COMPLEX WITH NOEUROMYCIN'''<br />
 
-
==About this Structure==
+
==Structure of a family 26 lichenase in complex with noeuromycin==
-
2V3G is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum] with <scene name='pdbligand=BGC:'>BGC</scene> and <scene name='pdbligand=NOY:'>NOY</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] Known structural/functional Site: <scene name='pdbsite=AC1:Noy+Binding+Site+For+Chain+A'>AC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3G OCA].
+
<StructureSection load='2v3g' size='340' side='right'caption='[[2v3g]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
-
[[Category: Cellulase]]
+
== Structural highlights ==
-
[[Category: Clostridium thermocellum]]
+
<table><tr><td colspan='2'>[[2v3g]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V3G FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
-
[[Category: Davies, G.J.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=NOY:(2R,3S,4R,5R)-5-(HYDROXYMETHYL)PIPERIDINE-2,3,4-TRIOL'>NOY</scene></td></tr>
-
[[Category: Gloster, T.M.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v3g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3g OCA], [https://pdbe.org/2v3g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v3g RCSB], [https://www.ebi.ac.uk/pdbsum/2v3g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v3g ProSAT]</span></td></tr>
-
[[Category: Meloncelli, P.J.]]
+
</table>
-
[[Category: Money, V.A.]]
+
== Function ==
-
[[Category: Stick, R.V.]]
+
[https://www.uniprot.org/uniprot/GUNH_ACET2 GUNH_ACET2] This enzyme catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
-
[[Category: Tarling, C.A.]]
+
== Evolutionary Conservation ==
-
[[Category: Withers, S.G.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: BGC]]
+
Check<jmol>
-
[[Category: NOY]]
+
<jmolCheckbox>
-
[[Category: beta-1 4 beta-1 3 glucanase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v3/2v3g_consurf.spt"</scriptWhenChecked>
-
[[Category: carbohydrate metabolism]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: cellulose degradation]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: glycosidase]]
+
</jmolCheckbox>
-
[[Category: glycoside hydrolase family 26]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v3g ConSurf].
-
[[Category: hydrolase]]
+
<div style="clear:both"></div>
-
[[Category: lichenase]]
+
-
[[Category: polysaccharide degradation]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 10:49:36 2008''
+
==See Also==
 +
*[[Glucanase 3D structures|Glucanase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Acetivibrio thermocellus]]
 +
[[Category: Large Structures]]
 +
[[Category: Davies GJ]]
 +
[[Category: Gloster TM]]
 +
[[Category: Meloncelli PJ]]
 +
[[Category: Money VA]]
 +
[[Category: Stick RV]]
 +
[[Category: Tarling CA]]
 +
[[Category: Withers SG]]

Current revision

Structure of a family 26 lichenase in complex with noeuromycin

PDB ID 2v3g

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools