This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2jq5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2jq5" [edit=sysop:move=sysop])
Current revision (10:10, 20 December 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2jq5.png|left|200px]]
 
-
<!--
+
==Solution structure of RPA3114, a SEC-C motif containing protein from Rhodopseudomonas palustris; Northeast Structural Genomics Consortium target RpT5 / Ontario Center for Structural Proteomics target RP3097==
-
The line below this paragraph, containing "STRUCTURE_2jq5", creates the "Structure Box" on the page.
+
<StructureSection load='2jq5' size='340' side='right'caption='[[2jq5]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2jq5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JQ5 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_2jq5| PDB=2jq5 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jq5 OCA], [https://pdbe.org/2jq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jq5 RCSB], [https://www.ebi.ac.uk/pdbsum/2jq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jq5 ProSAT], [https://www.topsan.org/Proteins/NESGC/2jq5 TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Solution structure of RPA3114, a SEC-C motif containing protein from Rhodopseudomonas palustris; Northeast Structural Genomics Consortium target RpT5 / Ontario Center for Structural Proteomics target RP3097===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q6N568_RHOPA Q6N568_RHOPA]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_21161328}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 21161328 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jq/2jq5_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_21161328}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[2jq5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JQ5 OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jq5 ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:021161328</ref><references group="xtra"/>
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Rhodopseudomonas palustris]]
[[Category: Rhodopseudomonas palustris]]
-
[[Category: Arrowsmith, C H.]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Gutmanas, A.]]
+
[[Category: Gutmanas A]]
-
[[Category: Karra, M.]]
+
[[Category: Karra M]]
-
[[Category: Lemak, A.]]
+
[[Category: Lemak A]]
-
[[Category: Lukin, J.]]
+
[[Category: Lukin J]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Semesi A]]
-
[[Category: OCSP, Ontario Centre for Structural Proteomics.]]
+
[[Category: Yee A]]
-
[[Category: Semesi, A.]]
+
-
[[Category: Yee, A.]]
+
-
[[Category: Nesg]]
+
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Ocsp]]
+
-
[[Category: Ontario centre for structural proteomic]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Sec-c motif containing protein]]
+
-
[[Category: Structural genomic]]
+

Current revision

Solution structure of RPA3114, a SEC-C motif containing protein from Rhodopseudomonas palustris; Northeast Structural Genomics Consortium target RpT5 / Ontario Center for Structural Proteomics target RP3097

PDB ID 2jq5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2jq5"
Personal tools