2y1v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:07, 23 August 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2y1v.png|left|200px]]
 
-
<!--
+
==Full length structure of RrgB Pilus protein from Streptococcus pneumoniae==
-
The line below this paragraph, containing "STRUCTURE_2y1v", creates the "Structure Box" on the page.
+
<StructureSection load='2y1v' size='340' side='right'caption='[[2y1v]], [[Resolution|resolution]] 2.39&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2y1v]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_TIGR4 Streptococcus pneumoniae TIGR4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y1V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Y1V FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.39&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-
{{STRUCTURE_2y1v| PDB=2y1v | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2y1v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y1v OCA], [https://pdbe.org/2y1v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2y1v RCSB], [https://www.ebi.ac.uk/pdbsum/2y1v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2y1v ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A0H2UNM7_STRPN A0A0H2UNM7_STRPN]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
RrgB is the major pilin which forms the pneumococcal pilus backbone. We report the high-resolution crystal structure of the full-length form of RrgB containing the IPQTG sorting motif. RrgB fold is organized into four distinct domains, D1 to D4, each of them stabilized by an isopeptide bond. Crystal packing revealed a head-to-tail organization involving the interaction of the IPQTG motif into the D1 domain of two successive RrgB monomers. This fibrillar assembly, which fits into the electron microscopy density map of the native pilus, likely induces the formation of the D1 isopeptide bond, as observed for the first time here, since neither in published structures, nor in soluble RrgB produced in Escherichia coli or in Streptococcus pneumoniae, the D1 bond is present. Experiments performed in live bacteria confirmed that the intermolecular bond linking the RrgB subunits takes place between the IPQTG motif of one RrgB subunit and the Lys183 pilin motif residue of an adjacent RrgB subunit. In addition, we present data indicating that the D1 isopeptide bond is involved in RrgB stabilization. In conclusion, the crystal RrgB-fiber is a compelling model for deciphering the molecular details required to generate the pneumococcal pilus.
-
===Full length structure of RrgB Pilus protein from Streptococcus pneumoniae===
+
The full-length Streptococcus pneumoniae major pilin RrgB crystallizes in a fiber-like structure, which presents the D1 isopeptide bond and provides details on the mechanism of pilus polymerization.,El Mortaji L, Contreras-Martel C, Moschioni M, Ferlenghi I, Manzano C, Vernet T, Dessen A, DI Guilmi AM Biochem J. 2011 Oct 21. PMID:22013894<ref>PMID:22013894</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_22013894}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2y1v" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 22013894 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_22013894}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
[[2y1v]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y1V OCA].
+
[[Category: Streptococcus pneumoniae TIGR4]]
-
 
+
[[Category: Contreras-Martel C]]
-
==Reference==
+
[[Category: Dessen A]]
-
<ref group="xtra">PMID:022013894</ref><references group="xtra"/>
+
[[Category: DiGuilmi AM]]
-
[[Category: Streptococcus pneumoniae]]
+
[[Category: El-Mortaji L]]
-
[[Category: Contreras-Martel, C.]]
+
[[Category: Manzano C]]
-
[[Category: Dessen, A.]]
+
[[Category: Vernet T]]
-
[[Category: Diguilmi, A M.]]
+
-
[[Category: El-Mortaji, L.]]
+
-
[[Category: Manzano, C.]]
+
-
[[Category: Vernet, T.]]
+
-
[[Category: Major pilin]]
+
-
[[Category: Pilus assembly]]
+
-
[[Category: Structural protein]]
+

Current revision

Full length structure of RrgB Pilus protein from Streptococcus pneumoniae

PDB ID 2y1v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools