This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3r5b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:52, 21 February 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3r5b.png|left|200px]]
 
-
<!--
+
==Pseudomonas aeruginosa DapD (PA3666) in complex with L-2-aminopimelate==
-
The line below this paragraph, containing "STRUCTURE_3r5b", creates the "Structure Box" on the page.
+
<StructureSection load='3r5b' size='340' side='right'caption='[[3r5b]], [[Resolution|resolution]] 2.51&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3r5b]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R5B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R5B FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.51&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NPI:(2S)-2-AMINOHEPTANEDIOIC+ACID'>NPI</scene></td></tr>
-
{{STRUCTURE_3r5b| PDB=3r5b | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r5b OCA], [https://pdbe.org/3r5b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r5b RCSB], [https://www.ebi.ac.uk/pdbsum/3r5b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r5b ProSAT]</span></td></tr>
-
 
+
</table>
-
===Pseudomonas aeruginosa DapD (PA3666) in complex with L-2-aminopimelate===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/DAPD_PSEAE DAPD_PSEAE] Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA. It can only accept L-2 aminopimelate as substrate.<ref>PMID:22359568</ref>
-
 
+
== References ==
-
==About this Structure==
+
<references/>
-
[[3r5b]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R5B OCA].
+
__TOC__
-
[[Category: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase]]
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Sandalova, T.]]
+
[[Category: Sandalova T]]
-
[[Category: Schneider, G.]]
+
[[Category: Schneider G]]
-
[[Category: Schnell, R.]]
+
[[Category: Schnell R]]
-
[[Category: Transferase-transferase substrate complex]]
+

Current revision

Pseudomonas aeruginosa DapD (PA3666) in complex with L-2-aminopimelate

PDB ID 3r5b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3r5b"
Personal tools