2pc6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2pc6" [edit=sysop:move=sysop])
Current revision (15:20, 17 June 2021) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pc6.png|left|200px]]
 
-
<!--
+
==Crystal structure of putative acetolactate synthase- small subunit from Nitrosomonas europaea==
-
The line below this paragraph, containing "STRUCTURE_2pc6", creates the "Structure Box" on the page.
+
<StructureSection load='2pc6' size='340' side='right'caption='[[2pc6]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2pc6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Niteu Niteu]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2fgd 2fgd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PC6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PC6 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2pc6| PDB=2pc6 | SCENE= }}
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2fgd|2fgd]], [[2fgc|2fgc]]</div></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ilvH, NE1324 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=228410 NITEU])</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Lyase Lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.3.18 4.1.3.18] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pc6 OCA], [https://pdbe.org/2pc6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pc6 RCSB], [https://www.ebi.ac.uk/pdbsum/2pc6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pc6 ProSAT], [https://www.topsan.org/Proteins/MCSG/2pc6 TOPSAN]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pc/2pc6_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pc6 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Crystal structures of two orthologs of the regulatory subunit of acetohydroxyacid synthase III (AHAS, EC 2.2.1.6) from Thermotoga maritima (TM0549) and Nitrosomonas europea (NE1324) were determined by single-wavelength anomalous diffraction methods with the use of selenomethionine derivatives at 2.3 A and 2.5 A, respectively. TM0549 and NE1324 share the same fold, and in both proteins the polypeptide chain contains two separate domains of a similar size. Each protein contains a C-terminal domain with ferredoxin-type fold and an N-terminal ACT domain, of which the latter is characteristic for several proteins involved in amino acid metabolism. The ferredoxin domain is stabilized by a calcium ion in the crystal structure of NE1324 and by a Mg(H2O)(6)2+ ion in TM0549. Both TM0549 and NE1324 form dimeric assemblies in the crystal lattice.
-
===Crystal structure of putative acetolactate synthase- small subunit from Nitrosomonas europaea===
+
Crystal structures of TM0549 and NE1324--two orthologs of E. coli AHAS isozyme III small regulatory subunit.,Petkowski JJ, Chruszcz M, Zimmerman MD, Zheng H, Skarina T, Onopriyenko O, Cymborowski MT, Koclega KD, Savchenko A, Edwards A, Minor W Protein Sci. 2007 Jul;16(7):1360-7. PMID:17586771<ref>PMID:17586771</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_17586771}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2pc6" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17586771 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_17586771}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
[[2pc6]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Nitrosomonas_europaea_atcc_19718 Nitrosomonas europaea atcc 19718]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2fgd 2fgd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PC6 OCA].
+
[[Category: Lyase]]
-
 
+
[[Category: Niteu]]
-
==Reference==
+
[[Category: Chruszcz, M]]
-
<ref group="xtra">PMID:017586771</ref><references group="xtra"/>
+
[[Category: Cymborowski, M T]]
 +
[[Category: Edwards, A]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Minor, W]]
 +
[[Category: Onopriyenko, O]]
 +
[[Category: Petkowski, J J]]
 +
[[Category: Savchenko, A]]
 +
[[Category: Skarina, T]]
 +
[[Category: Zheng, H]]
 +
[[Category: Zimmerman, M D]]
[[Category: Acetolactate synthase]]
[[Category: Acetolactate synthase]]
-
[[Category: Nitrosomonas europaea atcc 19718]]
 
-
[[Category: Chruszcz, M.]]
 
-
[[Category: Cymborowski, M T.]]
 
-
[[Category: Edwards, A.]]
 
-
[[Category: Joachimiak, A.]]
 
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
 
-
[[Category: Minor, W.]]
 
-
[[Category: Onopriyenko, O.]]
 
-
[[Category: Petkowski, J J.]]
 
-
[[Category: Savchenko, A.]]
 
-
[[Category: Skarina, T.]]
 
-
[[Category: Zheng, H.]]
 
-
[[Category: Zimmerman, M D.]]
 
-
[[Category: Acetolactate synthase]]
 
-
[[Category: Lyase]]
 
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
[[Category: Regulatory subunit]]
[[Category: Regulatory subunit]]
-
[[Category: Structural genomic]]
 

Current revision

Crystal structure of putative acetolactate synthase- small subunit from Nitrosomonas europaea

PDB ID 2pc6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pc6"
Personal tools