This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3qew

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:47, 21 February 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3qew.png|left|200px]]
 
-
<!--
+
==RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dDTP Opposite dT==
-
The line below this paragraph, containing "STRUCTURE_3qew", creates the "Structure Box" on the page.
+
<StructureSection load='3qew' size='340' side='right'caption='[[3qew]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3qew]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_RB69 Escherichia phage RB69] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QEW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QEW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.84&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene>, <scene name='pdbligand=DTP:2-DEOXYADENOSINE+5-TRIPHOSPHATE'>DTP</scene></td></tr>
-
{{STRUCTURE_3qew| PDB=3qew | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qew FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qew OCA], [https://pdbe.org/3qew PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qew RCSB], [https://www.ebi.ac.uk/pdbsum/3qew PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qew ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DPOL_BPR69 DPOL_BPR69] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.
-
===RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dDTP Opposite dT===
+
==See Also==
-
 
+
*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
[[3qew]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_rb69 Enterobacteria phage rb69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QEW OCA].
+
[[Category: Escherichia phage RB69]]
-
[[Category: DNA-directed DNA polymerase]]
+
[[Category: Large Structures]]
-
[[Category: Enterobacteria phage rb69]]
+
[[Category: Synthetic construct]]
-
[[Category: Konigsberg, W H.]]
+
[[Category: Konigsberg WH]]
-
[[Category: Wang, J.]]
+
[[Category: Wang J]]
-
[[Category: Xia, S.]]
+
[[Category: Xia S]]
-
[[Category: Datp/dt]]
+
-
[[Category: Difluorotoluene nucleoside]]
+
-
[[Category: Transferase-dna complex]]
+
-
[[Category: Triple mutant]]
+

Current revision

RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dDTP Opposite dT

PDB ID 3qew

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools