This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ty9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:43, 14 March 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ty9.png|left|200px]]
 
-
<!--
+
==Crystal Structure of C. Thermocellum PNKP Ligase Domain AMP-Adenylate==
-
The line below this paragraph, containing "STRUCTURE_3ty9", creates the "Structure Box" on the page.
+
<StructureSection load='3ty9' size='340' side='right'caption='[[3ty9]], [[Resolution|resolution]] 3.12&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3ty9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus_ATCC_27405 Acetivibrio thermocellus ATCC 27405]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TY9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TY9 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.12&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene></td></tr>
-
{{STRUCTURE_3ty9| PDB=3ty9 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ty9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ty9 OCA], [https://pdbe.org/3ty9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ty9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ty9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ty9 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of C. Thermocellum PNKP Ligase Domain AMP-Adenylate===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/A3DJ38_ACET2 A3DJ38_ACET2]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
[[3ty9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TY9 OCA].
+
[[Category: Acetivibrio thermocellus ATCC 27405]]
-
[[Category: Clostridium thermocellum]]
+
[[Category: Large Structures]]
-
[[Category: Shuman, S.]]
+
[[Category: Shuman S]]
-
[[Category: Smith, P.]]
+
[[Category: Smith P]]
-
[[Category: Wang, L.]]
+
[[Category: Wang L]]
-
[[Category: Adenylyltransferase]]
+
-
[[Category: Dna ligase/mrna capping enzyme]]
+
-
[[Category: Hen1]]
+
-
[[Category: Rna ligase]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal Structure of C. Thermocellum PNKP Ligase Domain AMP-Adenylate

PDB ID 3ty9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools