4adu

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[[Image:4adu.png|left|200px]]
 
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==Crystal structure of plasmodial PLP synthase with bound R5P intermediate==
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The line below this paragraph, containing "STRUCTURE_4adu", creates the "Structure Box" on the page.
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<StructureSection load='4adu' size='340' side='right'caption='[[4adu]], [[Resolution|resolution]] 2.44&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[4adu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_berghei Plasmodium berghei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ADU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ADU FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.44&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=R5P:RIBOSE-5-PHOSPHATE'>R5P</scene></td></tr>
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{{STRUCTURE_4adu| PDB=4adu | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4adu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4adu OCA], [https://pdbe.org/4adu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4adu RCSB], [https://www.ebi.ac.uk/pdbsum/4adu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4adu ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Biosynthesis of vitamins is fundamental to malaria parasites. Plasmodia synthesize the active form of vitamin B(6) (pyridoxal 5'-phosphate, PLP) using a PLP synthase complex. The EM analysis shown here reveals a random association pattern of up to 12 Pdx2 glutaminase subunits to the dodecameric Pdx1 core complex. Interestingly, Plasmodium falciparum PLP synthase organizes in fibers. The crystal structure shows differences in complex formation to bacterial orthologs as interface variations. Alternative positioning of an alpha helix distinguishes an open conformation from a closed state when the enzyme binds substrate. The pentose substrate is covalently attached through its C1 and forms a Schiff base with Lys84. Ammonia transfer between Pdx2 glutaminase and Pdx1 active sites is regulated by a transient tunnel. The mutagenesis analysis allows defining the requirement for conservation of critical methionines, whereas there is also plasticity in ammonia tunnel construction as seen from comparison across different species.
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===Crystal structure of plasmodial PLP synthase with bound R5P intermediate===
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Assembly of the Eukaryotic PLP-Synthase Complex from Plasmodium and Activation of the Pdx1 Enzyme.,Guedez G, Hipp K, Windeisen V, Derrer B, Gengenbacher M, Bottcher B, Sinning I, Kappes B, Tews I Structure. 2012 Jan 11;20(1):172-84. PMID:22244765<ref>PMID:22244765</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4adu" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 22244765 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_22244765}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[4adu]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Plasmodium_berghei Plasmodium berghei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ADU OCA].
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==Reference==
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<ref group="xtra">PMID:022244765</ref><references group="xtra"/>
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[[Category: Plasmodium berghei]]
[[Category: Plasmodium berghei]]
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[[Category: Guedez, G.]]
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[[Category: Guedez G]]
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[[Category: Sinning, I.]]
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[[Category: Sinning I]]
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[[Category: Tews, I.]]
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[[Category: Tews I]]
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[[Category: Pyridoxal 5-phosphate biosynthesis]]
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[[Category: Synthase]]
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[[Category: Transferase]]
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Current revision

Crystal structure of plasmodial PLP synthase with bound R5P intermediate

PDB ID 4adu

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