This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4dfb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:06, 13 March 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:4dfb.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of aminoglycoside phosphotransferase aph(2")-id/aph(2")-iva in complex with kanamycin==
-
The line below this paragraph, containing "STRUCTURE_4dfb", creates the "Structure Box" on the page.
+
<StructureSection load='4dfb' size='340' side='right'caption='[[4dfb]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[4dfb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_casseliflavus Enterococcus casseliflavus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3r81 3r81]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DFB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DFB FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=KAN:KANAMYCIN+A'>KAN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_4dfb| PDB=4dfb | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dfb OCA], [https://pdbe.org/4dfb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dfb RCSB], [https://www.ebi.ac.uk/pdbsum/4dfb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dfb ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/O68183_ENTCA O68183_ENTCA]
-
===Crystal structure of aminoglycoside phosphotransferase aph(2")-id/aph(2")-iva in complex with kanamycin===
+
==See Also==
-
 
+
*[[Phosphotransferase 3D structures|Phosphotransferase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
[[4dfb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_casseliflavus Enterococcus casseliflavus] and [http://en.wikipedia.org/wiki/Streptomyces_kanamyceticus Streptomyces kanamyceticus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3r81 3r81]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DFB OCA].
+
[[Category: Enterococcus casseliflavus]]
[[Category: Enterococcus casseliflavus]]
-
[[Category: Streptomyces kanamyceticus]]
+
[[Category: Large Structures]]
-
[[Category: Anderson, W F.]]
+
[[Category: Anderson WF]]
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
[[Category: Di leo R]]
-
[[Category: Egorova, E.]]
+
[[Category: Egorova E]]
-
[[Category: Evdokimova, E.]]
+
[[Category: Evdokimova E]]
-
[[Category: Li, H.]]
+
[[Category: Li H]]
-
[[Category: Minasov, G.]]
+
[[Category: Minasov G]]
-
[[Category: Osipiuk, J.]]
+
[[Category: Osipiuk J]]
-
[[Category: Savchenko, A.]]
+
[[Category: Savchenko A]]
-
[[Category: Stogios, P J.]]
+
[[Category: Stogios PJ]]
-
[[Category: Leo, R Di.]]
+
-
[[Category: Aminoglycoside phosphotransferase]]
+
-
[[Category: Aminoglycoside]]
+
-
[[Category: Antibiotic]]
+
-
[[Category: Center for structural genomics of infectious disease]]
+
-
[[Category: Csgid]]
+
-
[[Category: Eukaryotic protein kinase-like fold]]
+
-
[[Category: Kanamycin]]
+
-
[[Category: Kinase]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transferase]]
+
-
[[Category: Transferase-antibiotic complex]]
+

Current revision

Crystal structure of aminoglycoside phosphotransferase aph(2")-id/aph(2")-iva in complex with kanamycin

PDB ID 4dfb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4dfb"
Personal tools